Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139412086
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Entry
139412086 CDS
T10872
Name
(RefSeq) TRAF3-interacting protein 1
KO
K15708
E3 ubiquitin-protein ligase RNF180 [EC:
2.3.2.27
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139412086
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139412086
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
139412086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNF180_C
zf-RING_2
zf-C3HC4_3
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-RING_5
Nop53
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
139412086
NCBI-ProteinID:
XP_071014982
LinkDB
All DBs
Position
6:complement(41804831..41815130)
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AA seq
576 aa
AA seq
DB search
MCSRVGATSLYGAAAGDDVGGGGSGEDSDCELGCVAEALCLEVRPRLRYVDPGGPESEAR
SAGVEQIARPTLPGRKAHRTARSEDYREIDRERAGERNRDCDRERDRERGTAEDRNRERE
RDRDKESAGERNRDHERDKDRERDSQRNRERETRDQERERASDWDRNRDRDREDRRGRTQ
SFPNSNSNPLQTNTMEAPEGQGRLQRGLPSPGQPHASYQRSSTTLRSPRQASGSISPTLL
RPSIRIRTSTLSPRRLPQRMDITETRCGMYTVREPGAFWVEPGIGIGQLSPRRRTRTRLF
SHSSLELEEEEDEEEEGEEEEEEEGGEAGGSDVIGVVTQTLTTAVPLSPAPAAMDRRMTK
RERNRMKSLRKRQRRRERWRQSQLLENRQSSTGNPSSSSEEEDDVSAGDREGFICAVCLD
VYFSPYMCHPCNHIFCEPCLRTLAKNSPTNTPCPLCRTTITHVFFQTELNHTARTFFPKE
YFSRKQTFQKASCAKWPLPSCRKLFRIFGGFQRQASPIARRQFPHGGYRLDAMDFEDNSR
GWRFDIDMVIIYIYSVNWVIGFIIFCFLCYFFFPSF
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgtgctcgcgtgtgggagccactagtctttatggtgctgctgctggtgatgacgtgggt
ggtggtggtagtggagaagacagtgattgtgagctggggtgtgtggctgaagccctgtgt
ctagaggtcaggcctcggttaaggtacgtagatccaggtggaccagagagcgaggctcgc
tcagccggggtggagcagatagcaaggccgacgctacctgggagaaaggcacatcgaacg
gctcgtagtgaggactacagagagatagacagagagagagcaggagagaggaatagagac
tgtgatagggagagggacagagaacgagggactgcagaagatagaaacagagagagagag
agggatagagataaagagagtgcaggtgagagaaatagagaccatgagagggacaaggac
agagaaagagacagccagagaaatagagaaagagagaccagagaccaagagagagagaga
gctagtgactgggatagaaacagggacagggacagagaggaccggaggggcaggacacaa
agctttccaaacagtaactctaaccctcttcagactaacaccatggaggctccagagggt
caggggagactgcagagaggactaccctcgcctggacaaccccacgccagttaccaacga
tctagcaccaccctcaggtctccacgccaagcctccggctccatctctcccaccctactc
cgcccatccatccgaatcagaacctccactctgtcaccaaggagactgccgcaaaggatg
gacatcacggaaacacgatgtggcatgtacacggttagagagccaggtgcattctgggta
gagcccgggattgggattggccaattgtccccgagaagaaggactcggacacgcctcttc
tcccacagcagcttagagctggaagaggaagaggatgaggaagaagagggagaagaagag
gaagaggaggagggaggagaggcagggggtagtgatgtgataggggtggtgactcagacg
ctgactacagctgtgcccttgtcccctgctccagcagcgatggataggaggatgactaaa
agagagaggaacaggatgaagagtctgaggaagaggcagaggaggagagagagatggaga
cagagccagctgctggagaatagacagagttcgacggggaacccatcgagcagcagtgag
gaggaggatgatgtgagtgccggggacagagagggcttcatctgtgctgtgtgtctggat
gtttacttcagcccctacatgtgccacccctgtaaccacatcttctgtgagccctgcctc
cgtaccctggctaagaacagcccaaccaacaccccttgcccactctgcaggaccaccatc
actcacgtcttcttccagacggagttgaaccacacagcacggacattcttcccaaaggaa
tacttttcccggaaacagactttccagaaggcaagctgtgcaaaatggccgctcccaagc
tgcaggaaacttttccgtatttttggaggtttccagaggcaagctagtccaatagccagg
cgtcagtttccccacggggggtaccgtctagacgccatggactttgaggacaattctcgc
ggctggcgctttgacattgacatggtcattatctatatctattctgtcaactgggtcatc
ggcttcatcatcttctgctttctctgctacttctttttcccttctttctaa
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