KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139412105
Entry
139412105         CDS       T10872                                 
Name
(RefSeq) interleukin-1 beta isoform X1
  KO
K04519  interleukin 1 beta
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04010  MAPK signaling pathway
ocla04060  Cytokine-cytokine receptor interaction
ocla04217  Necroptosis
ocla04620  Toll-like receptor signaling pathway
ocla04621  NOD-like receptor signaling pathway
ocla04623  Cytosolic DNA-sensing pathway
ocla04625  C-type lectin receptor signaling pathway
ocla05132  Salmonella infection
ocla05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    139412105
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    139412105
 09140 Cellular Processes
  09143 Cell growth and death
   04217 Necroptosis
    139412105
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    139412105
   04621 NOD-like receptor signaling pathway
    139412105
   04623 Cytosolic DNA-sensing pathway
    139412105
   04625 C-type lectin receptor signaling pathway
    139412105
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    139412105
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    139412105
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:ocla04052]
    139412105
   00536 Glycosaminoglycan binding proteins [BR:ocla00536]
    139412105
Cytokines and neuropeptides [BR:ocla04052]
 Cytokines
  Interleukins
   139412105
Glycosaminoglycan binding proteins [BR:ocla00536]
 Heparan sulfate / Heparin
  Cytokines
   139412105
SSDB
Motif
Pfam: IL1 IL1_propep
Other DBs
NCBI-GeneID: 139412105
NCBI-ProteinID: XP_071014999
LinkDB
Position
6:complement(45661409..45664520)
AA seq 260 aa
MDFESNYSSIKNTSESAAWSSKLPQGLDLEVSHHPITMRHIANLIIAMERLKGGEGVTMG
TEFKDKDLLNFLLESAVEEHIVLELESAPPASRRAAGFSSTSQYECSVTDSENKCWVLMN
EAMELHAMMLQGGSSYHKVHLNLSSYVTPVPIETEARPVALSIKGSNLYLSCSKSGGRPT
LHLEEVADKDQLKSISQQSDMVRFLFYRRNTGVDISTLESASFRNWFISTDMQQDYTKPV
DMCQKAAPNRLTTFTIQRHN
NT seq 783 nt   +upstreamnt  +downstreamnt
atggattttgagtcaaactacagttcaataaagaacacctctgaaagtgcagcatggagc
tccaagctgcctcagggtctggatctggaggtatcccatcaccccatcaccatgcgccac
attgccaacctcatcatcgccatggagaggttaaagggtggcgagggggttaccatggga
accgagttcaaggacaaggacctgctcaacttcttgctggagagtgctgtggaagaacat
atagtgttggagttggagtcggcacccccagcgagcaggagggcagcagggttcagcagt
acatcacagtatgagtgtagcgtcactgactctgagaacaagtgctgggtcctgatgaat
gaggctatggagctgcacgccatgatgctccagggaggcagcagctaccacaaagtgcat
ttgaacctgtcttcgtacgtcacgcccgtccccattgagactgaagccagacctgtagcc
ctaagcataaagggatccaacctctacctgtcctgctccaaatcgggaggcaggcccacc
ctgcacctagaggaggttgcggacaaggatcagctgaagtccatcagccagcagagcgac
atggtgcgtttccttttctacagacggaacaccggggttgacatcagtaccctggagtct
gccagtttcaggaactggttcatcagcacggacatgcagcaggactacaccaaaccggtg
gacatgtgtcagaaggcagcccccaaccgccttaccaccttcaccatccagcgccacaac
taa

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