Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139412407
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Entry
139412407 CDS
T10872
Name
(RefSeq) neural-cadherin-like
KO
K27892
neural-cadherin
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Cell adhesion molecules [BR:
ocla04515
]
Cadherins
Cadherin related
139412407
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139412407
NCBI-ProteinID:
XP_071015311
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Position
6:57488026..57673912
Genome browser
AA seq
2919 aa
AA seq
DB search
MILTILICYFVTSVLGNKTEERIPFFHGHVFENSEPGSKVNGLSIPVKRVDAQRWCSNSG
MHLKLLGDGSEDFRVFAHHKRGHILLKTSIILDREERSEYLLSLGLCCQSCAANDHVVAE
VASVKVDVLDTNDHEPTFPNVDIKMSLDDATALRSVVYKVTAEDTDSGKNAELIYFALPK
NGSFYVVPKTGDVLLVDSILGLTAPIKFNVFAMDHGWPSRTSQSIDIEINPRQWPAVPPP
SHGEPNSRQPRKSRSLLESSEPIVLNVSEDASIGSVVMNLYPVRFQAASFELMDPGVDSS
PVTVSRDSGDIVITRRLDRETEPLVEITVKVQDKRGPDWYLVRLELTVTDVNDNVPEWTM
VPSPYLAVVSPNALAGSLVYKLHAQDGDEGNNGEVEYFLSDGGDGRFEVDRKSGHVRTTG
LPLQRDKEYLLTVVAADRLGSRSPPVVVSVIAGARAPQFSNASFIISLPENTPEGQPFLA
TPAVSFQKQPISYSLLINPSSLFSMQADTGEITLTRTIDFEMDQHSFLLMVRASEDQDSL
SSAAEVRVIITDENDCVPEFLQSIYSKDSVPETVTTATSLLQVSASDCDSDLNAELSYYT
LSPDFSISPHGTIFPAGQLDYERPNHLYEFVVMAVDKGDVPRTGTATVRIRMANVNDEVP
EFSQHVYRTFVSEDAGPNTLVATVLAKDPDGDGITYKITTGNDEGNFVIDSQKGLIRLRS
SPPPRLQGVEYVLNVTATDDNASGGPQALSSTAQVIVGVDDVNNNKPVFEKCQQYRERTT
VLENQPAGAFVLQVHAVDADEGSNGRVTYGFMHKDSTVPAFSIHPDTGAIVTSRKFDRER
QREYAVTVTATDQAADPLIGICQLNILILDENDNSPKFENLRYEYFLREDTMIGTSFLRV
AAHDDDYSTNAAVTYSMSKEQPEYLRVNPLTGWVYVNQPISQRTYITREIVATDGGNRSS
SVELSVTITNVKNQPPQWDRDSYDVVIPENTVRDTPIVTIKATSPLGDPRVTYNLEDGMV
PETNMPVRFYLTPNREDGSASILVAEPLDYETTRNFILRVRAQNVAAVPLAAFTTVHLNI
TDVNDNVPFFTSSIYEASVTEGAEVGAFVTQVSSNDLDLGLNGKISYSLLKDRSGDYQYF
RIDPELGSIYTEAVFDRETKGSYLLEVKSVDGWESARPGKHGQPNSDTAYVRVFISDVND
NKPVFAQTVYEVDVDEDADVGFAILTVSANDEDEGANAKLRYQITSGNTGGVFDVEPEVG
TIFIAQPLDYERNKGYKLLVLASDGKWEDYADVMVNVVNKNDEAPVFTVNEYYGSVTEEL
DGSPVFVLQVTATDPDKDADQEALRYSLHGQGAESEFIIDEVTGKIYAQRTLNREERAVW
RFVVLATDEGGEGLTGFTDIIINVWDINDNAPVFTCAPDCHGNVPENSAPGTSVMEMTAT
DLDDSAVGQNAVLSYRIVGDTGTGGSSSDMFSINPSTGTISVAMSGLDREQAEAYLLVVE
ARDGGGMMGTGTATIRVTDVNDHAPRFTERSCLARVPESSEPNAVVLEMSAEDWDTGENA
QLTFSVVAGDPEQKFSMVSHRQEQRGTLRLKKRLDYERTSEQRFNLTLKVEDLDFSSFIH
CIIEVEDCNDHTPIFIALSQPPAPLPEDVPVGSSVARLTASDSDSGQNKEITYKILQESD
ILGQFSVDQSGLVTVTSALDREKAAQHHLVILATDHGSPALTGSTVIQLTLLDVNDNGPE
FEAVYTPVVWENVAGPQLVRLNQTSTLLRAVDRDSAENGSPFYFSLPLELNHSNDFYLQD
NGNGTATITALRAFDRERQKEFHLQIIMSDSGHPPKTVTNTLTITIGDENDHAHQAGEKE
IFVNSHRGRMPTTVLGKIYAPDPDDWDNKTYAFEGHVPNYFLLNKRTGFLIIKENAPPGS
YEFQVRVSDGLWPDAVSGVTVYVRELRDEAIYNSGSLRLADITAKDFIEQRGSLRSRYEL
LVDFLSEMLAVGVDDINVFSLTDVRERTLDVRFAVHSSPFLRAERLQGYLAAHKQKLQSF
LQVNVSQVHVDECANTDCGGSGGCSNVLSVSDTPTVVDSGSMSLVSVTVESTAVCSCSGR
EHVHKICSSYPRNPCFNGGICVDTPSGYRCQCPTQFEGPECQQTKHSFHGNGYAWFPPIR
PCFESHLSLEFITEVADGLLLYSGPLAQLQPWDLEDFMAIELIDGTPTLKINHGSGTLVL
QLPGNVNVADRRWHRLDVRSNSKEVRFTLDRCAGATVMEMEGVGSWLTTEDHSSCEVTGV
TPNLDRHLNGTQVLQLGGVNEDLPYVYPQLQHKHFTGCIRNLVVDSKFYDLGTPADSVGS
SPGCLTTDGSCVNVGIPSCGPRGRCHGEWGSFSCQCIPGYTGTQCEQEVPEYSFDGRSHV
HYQLASPLPARRTQAQVLVRTRKHGSAILSLLSKEQTEYLRLEIYQGLLAVFYNLGDGDY
NLTLPSYRLDNGEWHEVYLDRHDNELTLRLDGGGGRREASAAPGRSREIITDPTVVMLGN
AFPSGSNKSFQGCMRDLRLNGRYVPLDGQSKDGVSVVSSQGLSVGCSSDSCKRNQCSPPF
TCVDLWRVHECRCPPGHMVKVNGTGKFCVYTLCASRPCHRGTCVAQSPSKFTCHCPEGYR
GRHCEVALAIYRDDVGLSFSSLFAICICFMALLVLLLGIFLYTRWRSYKGLKEGVYHVSA
HHDGWEDIRENVLNYDEEGGGERTSENTPLAPFSFSQMTWCIRLIRSNAYDMAELQKSLQ
PSPAQSVQYSRSRAIHQHHHTQHQHPQPQDTLSRLGANTALSSFTTTLRRDVPPTRTPAQ
GQSRPLLLARKSLSFSSQDLARYLCEIIRDADQAPETAPFDSLQVFSTEGGGSLAGSLSS
FSSAGLEEDTARGQDSLKDWGPRFEKLKALYEKTEASDL
NT seq
8760 nt
NT seq
+upstream
nt +downstream
nt
atgattttgactattttgatatgctatttcgtgacatctgtacttgggaataagacagag
gagaggataccgttctttcatggacatgtattcgagaactccgagcctggatccaaagta
aacggtctcagcatccctgtgaagcgagttgacgcgcagagatggtgctccaactccggc
atgcatctgaaactcttgggagacggaagtgaagatttccgggtatttgcccaccacaaa
cgcggacacatacttctgaaaacctcgatcatcctggacagagaggagcgctccgagtat
ctgctcagcctgggtctgtgctgccaaagctgcgccgctaatgaccatgtggtcgcagaa
gttgcatctgtgaaagtggatgttttggacactaatgaccacgagccaacattccctaat
gttgatataaaaatgagtctagacgacgccactgctctgcggtctgtggtgtataaagtg
accgcggaggatacagacagcgggaaaaacgctgaactaatttactttgctcttcccaaa
aatggcagtttttatgtggttccaaaaactggagatgtactgcttgtggactctatattg
ggtcttaccgcgcccataaagtttaacgtgtttgcgatggaccacggctggccctcgcgg
accagtcagagtattgacatcgagattaatccccggcaatggccagcggttccaccgcca
tcccatggtgaaccgaatagcagacaacctcggaagtcgaggtccctgctagagtcgagc
gagccgatcgtactaaatgtttccgaggatgccagtatcggttctgttgtaatgaacttg
tacccggtgaggtttcaggctgccagctttgagttgatggatcccggtgtggacagctca
ccggtcaccgtgagtcgggacagcggagatatagttattacccggcgcctggaccgggag
acggaacctctcgtggagattactgtgaaagttcaggataaaagaggtccagactggtac
ctggtacggctggagctgacggtgactgatgtgaatgacaatgttccggaatggaccatg
gttccctccccctacctggcagtggtatctcccaacgccctggccgggtcactggtctac
aagctccacgcccaggacggagatgagggcaacaacggggaggtggagtacttcctgtct
gatggtggtgacgggcgtttcgaggtggacagaaagagtggtcatgtccggaccacaggg
ctgccacttcagagggacaaagaatacctgttgacagtggtggctgctgaccggctgggt
agccgtagtcccccggtggtagtgtcagtcatagcaggagccagagcaccacagttctcc
aacgcatccttcattatttcactacctgagaacacaccagagggacagcccttcctggca
actccagccgtgtccttccagaagcaaccaatcagctacagcctgctcatcaatcccagc
agtctgttcagcatgcaggcggacacaggggagatcactctgaccaggaccatagacttt
gagatggaccagcacagcttcctgctcatggtcagggccagcgaggaccaggacagtctg
agcagcgctgctgaggtgcgtgtgatcatcacagacgaaaatgactgtgttcctgagttc
ctgcagtccatttacagcaaagacagtgtgccggagactgtaaccacggcaacctctctg
ctacaagtgtctgccagtgactgtgactcggacctgaacgctgagttgtcctactacact
ctgagcccagacttcagcatctctccccacggcaccattttccctgcagggcagctggac
tatgagaggcccaaccacctgtatgagtttgtggtgatggctgtggacaagggagatgtg
ccccggacaggtacagccactgtacgcatccgcatggccaatgtcaacgacgaggtcccc
gagttctcccagcatgtctaccggaccttcgtctcggaggacgccgggcctaacaccctg
gttgccacggtgcttgccaaggaccccgacggcgatggaatcacctacaaaatcacaacg
ggcaacgacgagggcaactttgttatcgacagccagaaaggtctgatccgtctgcgctcc
agcccacctcccagactccagggtgtagagtacgtcctgaacgtcacagcgaccgatgac
aacgcctctggcggcccccaggccctctcgtccaccgcccaggtcatcgtcggcgtggac
gacgtcaacaacaacaagcctgtctttgagaagtgccagcagtaccgggagcggaccacg
gtgctggagaaccagcctgcgggggcgttcgtcctccaggtccacgccgtggatgcagac
gagggctctaatgggagagtcacctatggattcatgcacaaagacagcactgtgcctgcc
ttcagtatccacccagacacaggtgcgattgtgacgtccaggaagtttgaccgcgagcgt
cagcgggagtacgcggtgacggtgacagctacggaccaggcagcagatcctctcataggg
atctgtcaactcaacatcctcattctcgatgagaacgacaacagccccaagtttgagaac
ctacgctacgagtacttccttcgggaggacacaatgattggcaccagtttcctgcgtgtg
gcggcccacgacgatgactacagcaccaatgccgccgtcacctactccatgtctaaagag
cagccagagtacctgagggtgaaccccttaactggctgggtctacgtcaaccagcccatc
tcacagaggacctacatcacccgggagatagttgccacggacggggggaaccggagcagt
tcggtggagctgtccgtcaccatcaccaacgtgaagaaccagcctccgcagtgggacagg
gacagctatgatgtggtcatcccagagaataccgtcagggacacacccatagtgactatc
aaggccacctctccactgggggaccctagagtgacctataacctggaggatgggatggtg
ccggagaccaacatgcctgtacgcttctatctgacccctaaccgtgaggacggctctgcc
tccatcctggtggctgagcccctggactatgagaccaccaggaacttcatactgagggtc
cgggctcagaatgtggctgcagtccccctggctgccttcactacggtccatctgaacatc
acagacgtgaacgacaatgttcccttcttcacctcgtccatctacgaggcgtcggtcaca
gagggggcggaggtgggggcgtttgtcacgcaggtgtcctccaatgacctggacctggga
ctcaacggaaagatctcctactccctgctgaaagaccgcagtggggactaccagtacttc
cggattgatcccgagctgggctccatctacacagaggccgtgtttgaccgtgagactaaa
ggctcctacctgctggaggtcaagtcagtggacggctgggagtcagcccgacctgggaaa
catggacagcccaactcagacacggcgtacgtgagggttttcatcagcgatgtgaacgac
aacaagcctgtctttgctcagacggtgtatgaagtcgacgtggatgaggatgcagacgtg
ggctttgccatcctgactgtcagtgctaatgacgaggatgaaggcgccaatgctaagctc
cgctaccagatcacgtctggcaacactggcggggtttttgacgtggaaccagaggtgggc
accatcttcatcgcccagcctctggactacgagcggaacaagggctacaagctgctggtg
ctggcgtcggacgggaagtgggaagactatgcggatgtgatggtcaacgtggtcaacaag
aacgacgaggcgccagtgttcacggtcaacgagtactacggctctgtgactgaagagctg
gatggatcgcctgtgttcgtgcttcaggtaactgctactgacccagataaggatgctgac
caggaggccctgcggtactccctccatggccagggagccgagagcgagttcattattgat
gaggtgacggggaagatctacgctcagaggactctgaaccgggaggagcgggccgtgtgg
aggtttgtggtcctggccacagatgagggcggcgagggtctgaccggattcactgacatc
atcatcaacgtgtgggacatcaacgacaacgcgcccgtcttcacctgtgcccccgattgt
catggtaacgtgccggagaactctgcccccggcacctctgttatggagatgacggccacc
gacctggacgactcggccgtgggccagaacgccgtgctctcctacaggattgtgggtgat
acgggtacaggtggcagcagctctgacatgttcagcattaacccgtccacgggcaccatc
tcggtggcaatgagtggcctggaccgggagcaggcagaggcctacctgctggtggtggag
gccagggacgggggtggcatgatgggcacgggtactgccaccatcagggtgacagatgtg
aatgaccacgcacccaggttcacagagcggtcctgcctggccagggttcctgagagcagt
gagcccaacgcggtggtgctggagatgtctgctgaggactgggacacgggagagaacgcc
cagcttaccttcagtgtggtggcaggagacccggagcagaagttctccatggtgagccac
cggcaggagcagcgtggcaccctgagactgaagaagaggctggactacgagaggacaagt
gagcagcgcttcaacctcaccctgaaggtcgaagacctggacttctcaagcttcatccac
tgtatcatagaggtagaggactgtaacgaccacacacccatcttcatcgcgctctcccag
ccgccagcgcccctgcccgaggacgtgcccgtgggcagcagtgtggccaggctgacagcc
agcgactctgactcaggccaaaacaaggagatcacctacaaaatccttcaggagtcagac
attctgggccagttctctgtagaccagtctggtctagtcactgtgaccagcgctctggac
agagagaaagcagcgcagcaccacctggtcatcctggctactgaccacggctctccggcc
ttgacggggagcaccgtcattcagctgactctgctggacgtcaacgacaacgggccggag
tttgaggcagtgtacaccccagtggtgtgggagaacgtcgctggtccccagctggtcaga
ctcaaccagacctccacactgctgcgggccgtagaccgagactcagctgagaacggatct
ccattctacttcagccttcccttagagctaaaccacagcaacgacttttacctgcaggat
aacggaaacggcacggccaccatcacagccctgagggccttcgaccgtgagaggcagaaa
gagttccacctgcagatcatcatgagtgacagcggccatccacccaagacggtcactaac
actctgaccatcaccataggagacgagaacgaccatgctcaccaggcgggagagaaggag
atttttgtcaacagtcacagagggaggatgccgaccactgtcctggggaagatctacgcc
ccggatcctgatgattgggacaacaagacctatgcctttgagggacatgtgcccaattac
ttcctcctgaacaagcggacgggattcctgatcattaaggagaacgctcccccgggcagc
tacgagtttcaggtgcgcgtgtcagacggactgtggccagacgctgtctctggggtaaca
gtgtatgtgagggagctgcgtgacgaggccatctacaactctggatccctccgcctggca
gacatcacagcgaaggattttattgagcagcgtggtagcttgaggagtcgttatgaactg
ctggtggacttcctgtcggagatgttggcggtgggcgttgacgacatcaacgtcttcagc
ctgacggacgtccgggagaggacactggacgtgcgcttcgcagtgcacagcagtcccttc
ctcagagcagagaggctacagggatacctcgccgctcacaaacaaaagctgcagtcgttc
ctgcaagtgaacgtcagccaggtacacgtggatgagtgtgccaacacagactgtggcggc
agcggcggctgctccaacgtgctgagtgtcagcgatacgcccactgtggtggattctggg
agcatgtcactggtgtcggtgacggtggagtccacagcagtatgcagctgctccgggaga
gaacatgtccacaagatttgctcttcctatcccagaaacccttgcttcaacgggggcatc
tgtgtcgacactccgagcgggtacagatgccagtgccctacgcagttcgaggggccagag
tgccagcagaccaaacacagtttccatggcaacggctatgcctggtttcctcccataagg
ccttgcttcgagagccatctctccctggagttcatcacggaggttgcagatggtctgctg
ctctacagtgggcccctggcccagctacagccctgggacctcgaggacttcatggccata
gaattgatcgatggcactcccacactcaagataaaccatggctcgggcacattggtcctg
cagttgccaggcaacgtaaacgtggcggacagacggtggcaccgtctggacgtgaggagc
aacagtaaggaggtacgcttcacactggaccgctgtgccggggccaccgtcatggagatg
gagggagtgggcagctggctcaccacagaggaccactcgtcctgtgaggtcactggtgtc
acacccaacctggacaggcacctgaatgggacccaggtgttacagctgggtggagtcaat
gaggacctgccctatgtctacccacagttacaacacaaacactttactggctgcatcagg
aacctcgttgtcgacagcaagttctatgacttgggcactccagcggactctgtgggcagc
tccccagggtgcctgactacggatgggagctgtgtcaacgtgggcatcccctcctgtggc
cctcggggtcgctgccatggagagtggggctccttcagctgccagtgcataccggggtac
actgggactcagtgtgagcaggaagttccagagtattcctttgatgggcggagtcatgtt
cattaccagttggcatctcctctgccagcccggcggacccaggcacaggttctggtccgg
acccgcaaacatggtagtgccatcctcagcctactgtccaaggaacagactgaatacctg
cgcttagagatctaccagggcctactggctgtcttctataacctgggagacggagactac
aacctgacactgccctcctatcgcctggacaatggtgagtggcacgaggtctacctggat
cgacacgacaacgagctgaccctgcgtctggatgggggcgggggcagacgggaggccagc
gcggctccaggccggagccgagagatcatcaccgacccaacagtggtgatgctgggaaac
gccttcccctcaggctccaacaagagcttccagggttgcatgcgggacctgaggctgaac
ggtcgatacgtacctctggatggccagtccaaagacggggtctctgtggtcagctcccag
gggctctccgtaggctgctcctccgactcctgcaagaggaaccagtgtagcccccccttc
acctgcgttgacctctggagagtccatgagtgcagatgtccccctggccacatggtgaag
gtgaacggtactggaaagttctgcgtctacaccctgtgtgccagtcggccgtgccaccgg
ggcacctgcgtggcacagtcgccctccaagttcacgtgccactgccccgagggctaccgg
gggcgccactgcgaggtggcgctggccatctaccgagacgacgtgggtctgagcttcagc
tccctgttcgccatttgcatctgcttcatggctctgctagtgctgctgctgggcatcttc
ctgtacacccgctggcgcagttacaagggcctaaaggagggcgtttaccacgtgtcagct
caccatgacggctgggaggacatcagagagaacgtgctcaactacgatgaggaaggagga
ggagagaggaccagtgaaaacactcccctcgcccccttctcgttctctcagatgacttgg
tgtattcggctaatacgatctaatgcctatgatatggccgagctacagaagtctctccag
cccagtccggcccagtctgtccagtacagccgctccagggccatccaccaacatcaccac
acccagcaccaacatccccagccccaggacactcttagcaggttgggcgccaacaccgcc
ctctcctcctttaccaccaccctgcggagggacgtgccgcccaccaggacccccgcccag
ggccagagcaggcccctcctgctggccagaaagagcctgtccttctccagccaggacctg
gcccgctacctgtgtgagatcatccgggatgctgaccaggctccagagacggcccccttc
gactccctgcaggtgttctccacggaggggggaggctcgctggccgggtccctcagctcc
ttcagctcagccgggctggaggaggacacggctaggggccaagactccctgaaggattgg
ggcccacgttttgagaaactcaaagccctctacgagaagaccgaggccagtgacctctga
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