Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139412715
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Entry
139412715 CDS
T10872
Name
(RefSeq) girdin-like isoform X1
KO
K25392
girdin
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ocla03037
]
139412715
Cilium and associated proteins [BR:
ocla03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
139412715
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
HOOK_N
GAS
DUF4472
KASH_CCD
Motif
Other DBs
NCBI-GeneID:
139412715
NCBI-ProteinID:
XP_071015483
LinkDB
All DBs
Position
1:77437703..77520394
Genome browser
AA seq
2023 aa
AA seq
DB search
MGSEVFTPLLEQFLLTPLVAWVKAAGHSSGNDGTKLSEYIELVDGIYLNEIMLEINPKAT
VQRTNKKVNNDSTLRIQNLSILIRQIKSYYQETLQQLVMMPLPNVLVLGRNPLSEQGLEE
MRKLLLLLLGCAVQCEKKEEYIERIQTLDFDTKAAIASHIQEVTHNQENVVDLQWLDGGE
LPPEDLDSFSRNMAFHLKRIVDERDDQLETIVELTQERDCGLYSPQPFCAQSPNDSPSMR
RTESRQHLSVELADAKAKIRRLRQELEEKSEQLLDCRQELDNMETENKRVQQESLQLLSD
ARSARAYRDELDALREKAVRVDKLESEVGRYKERLYDIEFYKARVEELKEDNQVLLETKA
MLEDQLEGTRARSDKLHELEKESLQLKSKIHDMEMDRDMDRKRIEELLEENLVLEMAQKQ
SMDESLHLGWELQQLSMTPDLTEVPQKSLGHEVNELTSSRLLKLEKENQTLLKTVEELRG
SASKHVPARLLKADKENQRLTQRLVQLESELNTERESLHSAEHLGTDLMKEKALLEKTLE
TLRENSERQVKGLEQENEHLTNTVSSLRQRSQVGPEARVKDVEKENRVLHESIRETSSKL
NKLEFERKQLRKDLAVYKEKGERTEELEVEAQRLERENEALQKRVASLGITCDKVASLEK
ENAELEAEGRRLKKNVEGLRSTSFQLEALEKENAQLDEENLKLRRAAEVLRSAGNKAAQL
ELENRELESERSQLKRSLELLKASSRKTERLEVSYQGLDTENQRLQKSLENSSRKIQQLE
GELQDVEQENQSLQRSLEELKISSKRLEQLEQENKTLEQESSQLEKDKKQLEKENKRLRQ
QAEIRDSKLDEDNLRISHLEKENRSLGKEMTSFKDSCNRLKDLEKENKELVKQATIDKKT
LVTLREELVSEKLRTQQMNNDLEKLTHELEKIGLNKERLLQAEQSSDDDRYKLLEFKLES
TLKSSLEIKEEKIAALEARLQESSNLNQQLRQELKTVKKNYEALRQREEEEERMVQSSPP
RGGDREDSQAVNKWEKESHETTRELLKVKDRLIEVERNNATLQAEKQALHTNLKQLETQS
SNLQAQILALQRQTASLQENNTTLQTQNAKLQVENSTLNSQSGALMAQNAQLATQQSSTE
NEKEGAMRDREDLRSTYEMLLRDHEKLAALHERQASEYEGLIGKHGGLKSSHKSLESQHR
DLEDRYNQLLRQKDQLEELEKQLKSEQEKMLSENKSHEATAADYHKLKEENERLNMAHRQ
LVKDNEGLQADHKNLKSQMNGAKLEQTRMEAEFSKLKEQYQQLDITSTKLTNQCELLSQL
KGNLEEENRHLLDQIQTLMLQNRTLLEQTMESKDLFHVEQRQYIDKLNELRRQKEKLEEK
IMDQYKFYDPSPPRRRGNWITLKMKKLIKPRSRERMRSLTLTPTRSESSEGFLGLPLDSQ
DSSSIGSGSNSLDDTLTHKRSSTLKRLPFMRTRSKEKDKEKAIYRRSMSMNDLLQTMALA
GGQWAGSTENLEAPVETNGGSGARRMKGLGSMAYSTNAINYATLTLPSGSRAKRSLKIKD
NASCEDVPASSDDPIGVKGQASRPSSLHSIKTISSNSNNNSHFSPLQTKGTLNGNLSRPH
SESSGEFSLSLDQEEWSSGSSPVQQPLSRSSHQSPMLLRRSLDPQAAQARKKTSNSLGSA
SEVVSLQQFLEESTDPAESGSQENLTVESPRLSGGAEHVQRDRAERGSTSCTGTKGRGIL
RSASGKAAPVHSDSRPPRGGQPGRPSLRKAESTRVKGTVQPRVSLSSQSKAMSVSERLDI
SSTSFSTLPRASSVISTAEGSTRRTSIHDLLSKDARQPVSVDHSPSSKASPSASTTPSEY
PPTSNPSQHPNHQSIPLDPALVPLSLPKSVSMPCTGSQQPPNSKETDLSSLESFFGKSFT
VESVFMDSIFSEPTFTGAKSHTFLSLNTSLVSNISGPPGKTHPQPNSVQTAQNQPNGQKP
CPPDQNGEQEVIDTNHVLDADQSPSQPLSPEDQQSLWYEYGCV
NT seq
6072 nt
NT seq
+upstream
nt +downstream
nt
atgggaagcgaggtttttacgccgttgctggagcaatttctgctcacgcctttggtcgcc
tgggttaaggcggctgggcattcatctggaaacgatggcaccaaactatcggaatacatt
gaattagtggatggcatttatttaaacgagatcatgcttgagataaatcctaaagccact
gttcaaagaaccaacaagaaagtgaacaatgactcaacactgcgcatacaaaacctctcc
atcctgatccgacagatcaagtcctattaccaggagaccctccagcagctggtgatgatg
cctctccccaacgtgctggtgctgggcaggaaccctctcagtgagcaaggactggaggag
atgaggaagcttttgttgctgttgcttggctgtgccgtccagtgtgagaagaaagaggag
tacatcgagaggatccagaccttagactttgacacaaaagctgccatagcatctcacatc
caagaggtgacccacaaccaggagaatgttgtggacctgcagtggctggatgggggcgag
ctgcctccagaggacctggactccttctccaggaacatggccttccatctcaaacgcata
gtggacgagagagacgaccagctggagaccatcgtggagctgacccaggagagggactgt
ggactgtactctccccagccgttctgtgcccagtcgcccaacgactcgcccagcatgcgc
cgcacagagagccggcagcacctgtctgtggagctggccgacgccaaggccaagatcaga
cgtctgcgccaggagctggaggagaagagtgagcagctgctggactgcagacaggaactg
gacaacatggagactgaaaataagagggttcagcaagagagcctgcagttgttgtcggac
gcccgttctgccagggcatatcgtgacgagctggacgctctgagggagaaggccgtcaga
gtggacaagctggagagtgaagtggggcgctacaaggagaggctctacgacattgagttc
tacaaagccagagtagaggagctgaaggaggacaaccaggtgctgcttgagaccaaggcc
atgctagaggaccagctggaaggaaccagggctcgctctgacaaactccacgagctggag
aaagagagcctgcagctcaaatccaagatccacgacatggaaatggaccgggacatggac
aggaagcgtattgaggagctgctagaggagaacctggtcctggagatggcccagaaacag
agcatggatgagtctctccacctggggtgggaactacagcagctctccatgacccctgac
ctgacagaggtgcctcagaagtccctgggccacgaggtgaatgagctgacatccagccgg
ctgctgaagctggagaaggagaaccagaccctgctgaagactgtggaggagctgagaggt
tctgccagcaaacacgtccccgcacgtctcctcaaggccgacaaggagaaccagaggctc
acccagaggctggtgcagctggagagtgagctgaacacagaaagggagagtctgcacagt
gcagagcatcttggcaccgacctgatgaaggagaaggctctgctggagaaaaccctggag
acgctgagggagaattctgagagacaggtgaaaggcctggagcaggagaatgagcatctg
accaataccgtctcgtcgctgaggcaacgctcccaggtgggccctgaggcgcgggtcaaa
gacgtggagaaggagaaccgcgtgctgcacgagtccatccgggagaccagctccaagctc
aacaagctggagtttgagcgtaagcagctgcgtaaggacctggcggtttacaaggagaag
ggcgagaggacagaggagctggaggtggaggcgcagcggctggagagggagaacgaggcc
ctgcagaagcgagtagccagcctgggcatcacctgtgacaaggtggcgtctctggagaag
gagaacgcagagcttgaggcagagggccgtcgtttgaagaagaacgtggaaggcctgcgg
agcacctccttccagctggaggccctggagaaggagaatgcccagctggacgaggagaac
ctgaagctccgcagggctgcagaggtgctccgctcggccgggaacaaggcggctcagctg
gaactggagaaccgggagctggagagcgagaggagccagctgaagagaagcctggagctg
ctcaaagcctcctccaggaagacggagaggctggaggtgagctaccagggcctggacacg
gagaaccagcggctgcagaaatccctagagaacagcagccgcaagatccagcagctagag
ggggagctgcaggacgtagaacaggagaaccagagtctgcagaggagcctggaggaactg
aagatctccagcaaacgtctggagcagctggagcaggagaataagactctggagcaggag
agctctcagctggagaaggacaagaagcagctggagaaggaaaacaagaggctgagacag
caggcggagatcagggactccaagctggacgaggacaacctgaggatcagccacctggag
aaggagaaccgctcactgggcaaggagatgacctccttcaaggactcctgcaaccgcctt
aaagacctggagaaggagaacaaagagctggtcaaacaggccactatagataagaagacc
ctggtcactctgcgagaggaactggtgagtgagaaactgcggactcagcagatgaacaat
gatcttgagaaactgacccacgagctggagaagataggccttaacaaggagaggttgctg
caagccgagcagagctctgacgacgacaggtacaagctgctggagttcaagctagagtcc
actctcaagtcttctctggagatcaaggaggagaagatagctgccttggaggccagactg
caggagtcctctaacctcaaccaacaactgcgccaggaacttaaaactgtgaagaagaac
tacgaggccctgcgacagagggaggaggaggaggagaggatggtgcagagctcacccccc
agaggaggggacagggaggactctcaggccgtcaacaagtgggagaaggagagccacgag
accacccgggaactgctcaaggtcaaagaccgcctcattgaggtggagaggaacaatgcc
accctccaggcagagaagcaggccctgcataccaacctgaagcagctagagacccagagc
agtaacctgcaggcccagattctggctctgcagagacagactgcctctctacaggagaac
aacaccacactacagacacagaacgccaaactacaggttgagaactcaacgctgaactcc
cagagtggcgctctcatggcccagaatgcccaactggcgacgcagcagtccagtacggag
aacgagaaggagggggcgatgagggacagggaagacctgaggtccacctatgagatgctg
ctaagggaccatgagaaactggctgccctgcatgagagacaggcctccgagtatgagggc
ctcatcggcaaacatggaggcctgaaaagttcccacaagagtctagagtcacagcacaga
gacctggaggacaggtataaccagctgctgaggcagaaggatcagctagaagagctggag
aaacagctgaagtcagagcaggagaagatgctgtctgagaacaagagccacgaggccacg
gctgcagactaccacaaactgaaggaggagaatgaaaggctgaacatggcacaccgtcag
ctggtgaaggataatgagggcctgcaggccgaccataagaacctgaagagccagatgaac
ggtgccaagctggaacagacccgcatggaagcggagttctccaaactcaaagagcagtac
cagcagctggacatcacctccacaaagctcactaaccagtgtgagttgctgagtcagttg
aaagggaacctggaggaggagaaccgtcacctgctggaccagatccagaccctgatgctg
cagaaccgcaccctgctagaacagaccatggagagcaaggacctgttccacgtagaacag
agacagtacatagacaagctgaacgagttgaggagacagaaggagaagctggaggagaag
atcatggatcagtacaagttctacgacccctcacctccacggagacgggggaattggatc
accctgaagatgaagaagctgatcaagccgaggagtcgggagaggatgcgttccctgaca
ctgactcccacacgctccgagtccagcgagggcttcctggggcttcctctggacagccag
gactcctcctccataggctctggctccaactccctggacgacacgctgacacacaagagg
agcagcactctgaaaaggttgccctttatgaggaccagatcgaaggagaaagacaaagag
aaggccatctaccgccggtccatgtctatgaacgacttgctacagaccatggcgctggcg
gggggtcagtgggcaggcagcacagagaacctggaggcgcccgtcgagaccaacgggggc
agcggtgcccggcgaatgaaagggctgggttccatggcctactccaccaacgctatcaac
tacgccacactcaccctgccttcaggcagcagggccaagaggagcctgaagatcaaagac
aacgcttcctgtgaagatgttccagcatcctcagacgaccccattggggtcaaagggcaa
gcctccagaccctccagcctccatagtatcaagaccatcagtagtaatagcaataataac
tcccacttctctccactccagaccaaaggcacgttgaacggaaacctcagcaggccccac
agtgagagcagtggggagttcagtctcagtctggaccaggaggagtggtccagcgggagc
agccctgtccagcagcccctgtcccgctcctctcaccagagccccatgctgctgcggagg
tccctggacccccaggccgcccaggccaggaagaagacgagcaactccttgggcagcgcc
agtgaagtggtctctctacagcagttcctagaggagagcaccgaccctgcagagtctggc
agccaagagaatctgaccgttgagtctccccgcctctctggaggcgctgagcatgtgcag
agggaccgggctgagcgaggctccacctcctgcaccggcactaaggggcggggcatcctg
cgctcagccagtgggaaggcagcgccagtgcactcagacagccgccccccaaggggtggc
caaccaggtcgtcccagtctacggaaggcagagagtacgcgtgtgaagggcacggtccag
ccccgggtcagcctctcctcccagagtaaagccatgtctgtgtctgagcgtctggacatc
tcctccacctccttctccacgctgccccgggccagcagcgtcatctccacagctgagggc
tccacgcgtcggaccagcatacacgacctgctgtccaaagacgcccggcagcccgtgtct
gtggaccactcaccctcctcaaaggcctcgcctagcgcctccaccacgcccagtgagtac
cccccaaccagtaacccctcacaacaccccaatcaccagtccatccccctagacccagcc
ctcgtgcccctgtccctgcccaagtcagtcagtatgccctgcacgggcagtcagcaaccc
cccaatagtaaggaaactgatctctctagcctggagtccttctttggaaagtccttcaca
gtagagtcagtgtttatggactccatcttcagcgagccaaccttcacaggggccaagagc
cacaccttcctctccctcaacacctccctggtcagtaacatcagtggtcccccaggcaaa
acacacccccagcccaactctgttcaaacagcccagaaccaaccaaatgggcaaaagccc
tgcccacctgaccagaatggggaacaggaggtaattgacaccaatcatgtgctcgatgct
gaccaatccccatcccaaccccttagcccagaggaccaacaatcattgtggtatgagtat
ggctgtgtctga
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integrated database retrieval system
