Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139412784
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Entry
139412784 CDS
T10872
Name
(RefSeq) cytoplasmic FMR1-interacting protein 1 homolog isoform X1
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04810
Regulation of actin cytoskeleton
ocla05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
139412784
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
139412784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139412784
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
139412784
Factors involved in mRNA localization
Other mRNA localization factors
139412784
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
MauJ
CsiV
Motif
Other DBs
NCBI-GeneID:
139412784
NCBI-ProteinID:
XP_071015638
LinkDB
All DBs
Position
1:1642861..>1751141
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AA seq
1253 aa
AA seq
DB search
MASTVTLEDALSNVDLLEELPLPDQQPCIEPLPCSLMYQPNFNTNFEDRNAFVTGIARYI
EQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEVT
KLMNFMYFQRTAIDRFCGEVRRLCHAERRKDFVSEAYLLTLGKFINMFAVLDELKNMKCS
VKNDHSAYKRAAQFLRKMSEPSSIQESQNLSMFLANHNKITQSLQQQLEVINGHDELLAD
IVNLCVDYYENRMYLTPNEKHMLLKVMGFGLYLMDGSNSNIYKMDAKKRINLIKIDKFFK
QLQVVPLFGDMQIELSRYIKTSAHFEENKNRWSCTSTGSSPQYNICEQMVQIREDHMKFI
SELARYSNSEVVTGSGRQEAHKTDHEYRKLFDLALQGMQLLSQWSAHVMEVYSWKLVHPT
DKYSNKECPDNAEEYERATRYNYTMEEKFALVEVMAMIKGLQVLMGRMESVFNHAIRHTI
YSALQDFAQLTLRDPLRQAIKKKKSVVQSVLQAIRKTICDWETGREPHNDPALRGEKDPK
GGFDIKVPRRAVGPSSTQLYMVRTMLESLIADKSGSKKTLRSCLEGPTIMDMEKFHRESF
FYTHLLNFSETLQQCCDLSQLWFREFFLELTMGGRIQFPIEMSMPWILTDHILETKEASM
MEYVLYPLDLYNDSAHYALTKFKKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKILAGS
LLLDKRLRADCKNQGANIPWPASNRYETLLKQRHVQLLGRSIDLNRLITQRVSAALYKSL
ELAINRFESEDLTSIVELEGLMNINRMTHKLLSKFLTLDSMDAMFREANHNVSAPYGRIT
LHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQEFQRDKPPNAQPQYLYGSKALNLAYSS
IFGFYRHFVGPPHIKAMCRLLGYQGIAVVMEELLKVVKSLLQGTIMQYVKTLMEVMPKIC
RLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCFQNLREVGNALLFCLLSEQSLSQEEVC
DLLHAAPFQNILPRVHVKEGERLDAKMKRLEAKYTALHLVPLIERLGTPQQIAITREGDL
LTKERLCCGLSMFEVILTRVRGFLDDPIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCI
PVGAHEFTVEQCFGDGLHWAGCMIISLLGQQRRFDILDFSYHLLKVQKHDGKDEIIKSVP
LKKMVDRIHKFQVLNDEIYAILNKYLKSGDGENMPVEHVRCFQPPIHQSLASN
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccacggtgaccctggaggatgctctgtccaatgtggaccttttggaggagctg
cctctcccagaccagcagccctgcatcgagcccctgccctgctccctcatgtaccagccc
aacttcaacaccaactttgaggaccgtaatgcttttgtgacggggatcgccagatatatc
gagcaggccaccgttcactctagcatgaatgagatgctggaggagggccaggagtatgct
gtgatgctgtacacgtggaggagctgctctcgcgctatcccacaggtgaagtgtaatgag
cagcccaacagagtggagatctatgaaaagacagtggaggtgctggagcctgaggtcacc
aagctcatgaactttatgtacttccagcgaacggctatagaccggttctgtggggaggtg
cgtcgtctctgccacgctgagaggaggaaggactttgtctccgaggcctacctcctgacc
ttggggaagttcatcaacatgttcgctgtgctggatgaactcaagaacatgaagtgtagc
gtcaagaacgaccactctgcatacaaacgagctgcccagttcctcaggaaaatgtcagaa
ccctcatccatccaggaatctcagaacctctccatgtttctggccaaccacaacaagatc
actcagtctctgcagcagcagttggaggtgattaacggccacgatgagttgctggctgac
atagtcaacctgtgtgttgattactatgagaacaggatgtacctgacccccaacgagaaa
cacatgctgctcaaggtgatggggtttggtctgtacctgatggatggcagtaacagcaac
atctacaaaatggacgccaagaagaggatcaacctgatcaagattgacaagttcttcaag
caactgcaggtggtgcctctgtttggtgacatgcagattgagctgtccaggtacatcaag
accagcgcacactttgaagagaacaagaaccggtggtcatgtacctcaacaggcagcagt
cctcagtataatatctgtgagcagatggttcagatcagggaagaccacatgaagttcatc
tctgagctggctcgctacagtaacagtgaggtggtgacggggtccggtcgtcaggaggcc
cacaagacagaccatgagtacaggaagctgtttgacttggctctgcaggggatgcagcta
ctgtcccagtggagcgcacacgtcatggaagtgtactcgtggaagctggttcatccaacg
gataagtactcgaacaaggagtgtcctgacaacgcggaggagtatgaacgagctacacga
tacaactacaccatggaggagaagtttgcccttgtcgaggtgatggccatgataaagggt
ttacaggtcctgatgggtcgtatggagtcggtgtttaaccacgctatccgccacaccatc
tactcggccctgcaggacttcgcccagctcaccctgagagacccgctacggcaggccatc
aagaagaagaagagcgtggtgcagagtgtcctgcaggccatcaggaagaccatctgtgat
tgggagacagggcgtgagccccacaatgaccctgccctgcgaggagagaaagaccccaag
ggaggctttgacatcaaggtcccccgccgtgccgtcggcccctccagcacacagctgtac
atggttcgtaccatgctggagtctctgatagctgataaaagtggttctaagaagactctc
cgcagctgtctggagggacccaccatcatggacatggagaagttccacagagagtccttc
ttctatactcacctgctcaacttcagcgagaccctacagcagtgctgtgacctgtctcag
ctgtggttcagagagttcttcctggagctgaccatgggtggcaggatccagttccccatc
gagatgtccatgccctggatcctcacagaccacatactggagaccaaggaggcctctatg
atggagtatgtgctgtatcctctggacctctataatgacagtgcccactacgccctgacc
aagttcaagaagcagttcctctatgatgagatagaagcagaggtcaacctgtgttttgat
cagtttgtctacaagctggctgatcagatatttgcctactacaagattctagctggaagt
ctgttgctggacaagcgtctgagagcggactgtaagaaccagggagccaacatcccctgg
cctgcgtccaaccgctacgagaccctgctgaaacaacgccatgtacagctgctgggtcgt
tccatagacctgaaccgtctgatcacccagagagtgtctgctgctctctacaagtctctg
gagctggccatcaaccgctttgagagcgaggacctcacatccatcgtggaactagaaggt
ctgatgaacatcaaccgtatgacccacaagctgctgtctaagttcctgacgctggacagt
atggacgccatgttccgggaggccaatcacaatgtctccgccccctacggacgcatcaca
ctccatgtcttctgggaactcaactacgatttcctccccaactactgctacaacggatct
actaacaggtttgtccgcacggtcctgcccttctctcaggagttccagagggacaagccg
cccaacgcccagccccagtacctgtacggctcaaaggctctgaacctggcgtacagcagt
atctttggtttctacagacactttgttggtcctcctcacatcaaggccatgtgtcgtctg
ctggggtaccagggcatcgctgtggtcatggaggaactgctcaaagtggtcaagagcctg
ctccagggcaccatcatgcagtatgtgaagaccctgatggaggtgatgcctaagatctgc
cgtctcccccgccacgagtacggctcgccgggtatcctggagtttttccaccaccagctg
aaggacatagtagagtacgccgaactgaagaccgtctgcttccagaacctcagggaggtg
ggcaatgcactgctcttctgtctgctcagcgaacagagcctgtctcaggaggaggtgtgt
gacctgctacatgccgcaccattccagaacattcttcccagggtccatgtcaaggagggt
gagcgtcttgatgccaagatgaaacgcctggaggctaaatacacagccctgcacctggtt
cctctgatagaacgcctgggaaccccacagcaaatagccattacccgtgaaggtgacctg
ctgaccaaagagcgtctgtgctgtggcctgtccatgttcgaggtcatcctcacacgtgtc
cgcggtttcctggacgaccccatctggcgcggcccgttgcccagcaatggcgtgatgcac
gtggacgagtgtgtggagtttcaccggctgtggagcgccatgcagtttgtttactgcatc
cctgtaggagcacacgagttcaccgtggagcagtgttttggggacggtctccactgggct
gggtgtatgatcatctccctactgggtcaacagagacgctttgacatcctggacttcagc
tatcacctgctgaaggtgcagaaacacgatggaaaggatgagatcatcaagagtgtgcct
cttaaaaagatggtggacagaatccacaagttccaggttctcaacgatgagatctacgcc
attctgaacaagtacctgaagtcaggcgacggggaaaatatgcctgtggagcatgtccgg
tgtttccagcctcctatccaccaatccctggccagcaactga
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