Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139412798
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Entry
139412798 CDS
T10872
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1-like isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04517
IgSF CAM signaling
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
139412798
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139412798
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ocla04812
]
139412798
Cytoskeleton proteins [BR:
ocla04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
139412798
Intermediate filaments
Intermediate filament-binding proteins
139412798
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SOS1_NGEF_PH
CH_2
Motif
Other DBs
NCBI-GeneID:
139412798
NCBI-ProteinID:
XP_071015624
LinkDB
All DBs
Position
1:complement(77681799..77810245)
Genome browser
AA seq
2360 aa
AA seq
DB search
MELQRATSVPGPLSPGHLSPGSHSPGALSPSSGPGPSLATSPGPDPGYSAKQAAFNYNQL
EGRFKQLQDEREAVQKKTFTKWVNSHLARVSCRITDLYMDLRDGRMLIKLLEVLSGERLP
KPTKGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQD
IRVETEDNKEKKSAKDALLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNAILHKHRPDLID
FDKLKKSNAHHNLQNAFNLAEQHLGIHKLLDVEDISVDHPDEKSVITYVVTYYHYFSKMK
ALKVEGKRIGKVLDNAIETDNMIQKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQL
QAFNTYRTVEKPPKFTEKGNLEVLLFTIQSKMRANNQKVYMPRDGKLISDINKAWERLEK
SEHERELALRTELIRQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAAT
KKHEAIETDIGAYEERVQAVLSVAKELEAENYHDIKRVTARKDNVLRLWEYLLELLKARR
IRLEMNLGLQRVFQEMLHIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADIAIQA
NRVKAVNNNAQKFAIDAEGYKPCDPQVIRDRMAHMEFCYAELSQLAADRCARLEESRRLW
KFFWEMAEEEGWIREKEQILSSEDCGKDLTGAVRLLSQHRAFEDEMSGRAGHLQQTIKQG
EELVAADHFGADKIRKRIQDIQAQWAALEGLSAVRKTRLEEACNLHQFQADADDIDAWML
DVLRIVSSADVGHDEFSTQALVKKHKDVAEEITSYRPVIDALHEQSKTLPKEQTGSEEVQ
GRLAGIEERYKEVAELTRLRKQALQDALALYKMFNEAAACEVWIDEKEQWLNSMEIPEKL
EDLEVVQHRFESLEPEMNNQASRVAVVNQIARQLIHNGHPSEKEIKAQQDKLNTRWSQFR
DLVDLKKDSLNSALGVQNYHLECNETKSWIREKTKVIESTQELGNDLAGVMALQRKLTGM
ERDLAAIEDKLGELGKEGECLATEHPDQAQGIMGRLGEITGVWDEMKGTLKNREESLGEA
SKLQQFFRELDDFQSWLSKTQTAIASEDMPNTLTEAEKLLAQHEGIKNEIRNYEEDYQKM
RDMGEMVTQGQTDAQYMFLRQRLQALDTGWNELHKMWENRQNLLSQSHAHQLFLRDTKQA
EAFLNNQEYVLAHTEMPRTLEGAEGAIKKQEDFMTTMDANEEKIKAVVDTGRRLVSDGNV
NADRIQEKVDSIDERHKKNRMMASELLCKLKDNRDLQKFLQDCQELSLWINEKMLTAQDM
SYDEARNLHSKWLKHQAFMAELQSNKEWLDKIEKDGMQLMAEKPETESMVKEKLAALHKM
WDDLESTTQTKAKCLFDANKAELFTQSCADLDKWLVGVDGQIQSDDYGKDLTSVNILLKK
QQMLESQVEVRQKEVEELQSQAQVLSQEGKDTDEVDGQRRIVEKKFQQLLDPLRKRKGNL
MASREIHQFNRDMEDEILWVEERMPLAISTDHGNNLQTVQLLIKKNQTLQKEIQGHQPRC
DDIFERSLQVLKDDDDSLSGEEIHQRLADLRRLWAQILEETGKRHGRLEEAHMAQQYYFD
AAEAEAWMSEQELYMMSEEKAKDEQSSVAMLKKHQILEQAVEDYAETVHQLSQTSRGLTA
AGHPESERIGMRQSQVDKLYAGLKDLSEERRGKLDERFRLFQLNREVDDLEQWIAEREVV
AGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNQLADELINSDHTDAATIAEWK
DGLNEAWADLLELIDTRTQILAASFELHKFYHDAKEILNRILDKHKKLPEELGRDQNTVE
TLQRMHTTFEHDIQALGTQVRTLQEDAVRLQSAYAGDKADDIQKREGEVLEAWRTLLEAC
DGRRVRLLDTGDKFRFFSMVRDLMLWMEDVIRLIEAQEKPRDVSSVELLMNNHQGIKAEI
DARNNSFTNCIELGKSLLARKHYALEEIKEKLLQLTDKRKCMIDKWEDRWEWLRLVLEVH
QFGRDAGVAESWLLGQEPYLSSREMGQNVDEVEKLIKRHEAFEKSAATWEERFSALERLT
TMELLEVRRQQEEEERKRNPPPAETQTDDASPQQREGEQVSQNGLPSDQDSPRDNGEESD
IVNGVEEPSPGGSPGEARKVKPSQAATLPAKSQDSAPANQMEGYLHRKHEWEGHNKKASS
RSWHNVYCVINNREMGFYKDHKSASQGIPYHNQIPISLKDAACEVALDYKKKKHVFKLKA
TDGNEYLFQANEDEEMNSWMQAISSAASSDKTEMTPSSHSTPASSRAQTLPASVALATES
SPGKREKDKEKRFSLFSKKK
NT seq
7083 nt
NT seq
+upstream
nt +downstream
nt
atggagctacagagggcgaccagtgtgcctggccccttgtccccagggcatctctctcca
gggtcccactccccaggggccctgtccccttcttctgggcctggcccctctctagccacc
agccctggccctgatccgggctactccgccaaacaggctgccttcaactacaaccagctg
gagggccgctttaagcagctgcaagatgagcgtgaggcggtgcagaagaagaccttcacc
aagtgggtcaactcccacctagccagagtgtcctgcaggatcactgacctctatatggac
ctgagggatggacgcatgctcatcaaactactggaggtcctctctggggagagactgccc
aagcccactaaggggcgcatgcgtatccactgcctggagaacgtggacaaggccctgcag
ttcctcaaggagcagagggtccatctggagaatatgggctcccatgacattgtcgacggc
aaccaccgcctcaccctcggcctaatctggaccatcatcctccgcttccagatccaggac
atcagagtggagactgaggacaacaaggagaagaagtctgctaaagatgccctgctgctg
tggtgccagatgaagactgcaggatatcccaacgtgaacattcacaacttcagcaccagc
tggagagatggcatggccttcaacgccatcctccacaaacacagacctgacctaatagac
tttgacaagctgaagaagtccaacgcccaccacaatctgcagaatgccttcaacctggca
gagcaacacctgggcatccacaagctgctggacgtagaggatatcagcgtggaccacccg
gatgaaaagtccgtcatcacctatgttgtgacctactaccactacttctccaaaatgaag
gctctgaaggtggagggaaaacgtattgggaaggtactggacaatgccattgagaccgat
aacatgattcagaaatatgagagtctggcctctgacctcctggaatggattgaacagacc
atcatcatcctcaacaaccgcaagtttgccaactccttagtgggggtgcagcaacagctt
caggccttcaacacctaccgtactgtggaaaagccccccaagttcacagagaagggcaac
ctggaggttctcctcttcaccattcaaagtaagatgagggccaacaatcagaaggtctac
atgccacgggacggcaaactcatctcagacatcaacaaggcctgggagaggctggagaag
tctgagcatgagagggagctggcgctgaggacggagctgattcgtcaggagaaactggag
cagctggcccgccgcttcgaccgcaaggccgccatgagagagacctggctgagtgaaaac
caacgcctcgtctcgcaggacaactttggcttcgacctgcaggcagtggaggctgccacc
aaaaagcacgaggccattgagacggacatcggcgcctacgaggagcgtgtgcaggctgtg
ctctctgtggccaaggagctggaggcggagaactaccacgacatcaagcgcgtgactgcg
aggaaggacaatgtgctgcgtctgtgggagtacctgctggagctgctgaaggcccggcgc
atccggctggagatgaacctgggcctgcagagggtatttcaagagatgctccacatcatg
gactggatggacgagatgaagatgctgctgctgtcccaggactatgggaaacacctgctg
ggagtggaggacctgctgcagaagcatgctctggtggaggctgatatcgccatccaagcc
aaccgcgtcaaagccgtcaacaacaacgctcagaagttcgccatcgacgcagagggttac
aagccctgtgacccccaggtgatccgagaccgcatggcccacatggagttctgctacgca
gagctgagccagctggccgccgatcgctgcgcccgcctggaggagtcccgccgcctctgg
aagttcttctgggagatggccgaggaggagggctggatccgggagaaggaacagatcctg
tcctcggaggactgtggcaaggacctgactggggccgtgcgcctgctgagccagcatcgc
gccttcgaggacgagatgagcggtcgcgctggccacttgcagcagaccatcaaacaggga
gaggagctggtggccgccgaccacttcggagccgacaagatccgcaaacgcatccaagac
atccaggcgcagtgggcggccctggaggggctgtctgcagtcaggaagacccggctggag
gaggcctgcaacctgcaccagttccaggctgacgccgatgacatcgacgcctggatgctg
gatgttctccgcatcgtgtccagtgctgacgttggccacgacgagttctccacccaggcc
ctggtcaagaagcacaaggacgtggccgaggagatcaccagctaccgaccagtcatcgac
gccctgcacgagcagtccaaaaccctacccaaggagcaaactggctcagaggaggtgcag
gggcgcctggcaggcattgaagagcgctacaaggaggtagctgagctgacccggctgagg
aaacaggccctgcaggatgccctggccctctataagatgttcaacgaggcggccgcctgt
gaggtgtggatcgatgagaaggagcagtggctcaacagtatggagataccagagaaactg
gaagatctggaagtggttcagcacaggtttgagagtctggagccagagatgaacaaccaa
gcatcccgcgttgctgtggtgaaccagattgctaggcaactcatccacaacggtcacccc
agtgagaaggagatcaaagcccaacaggacaaactcaacaccagatggagccagttccgt
gacctagttgacctgaagaaagactccctcaactcagctctgggcgtgcagaactaccac
ctggagtgcaatgaaaccaagtcgtggatccgtgagaagaccaaggttatcgagtccacc
caggagctgggcaacgatcttgccggggtcatggccctacagcgcaaactcaccggcatg
gagcgtgacctggctgccatcgaggacaagctgggagaactggggaaggagggggagtgc
ctggcgactgagcaccctgaccaggcccagggcatcatgggtcgtctgggggagatcaca
ggggtgtgggatgagatgaagggcaccttgaagaatcgcgaggagtctcttggcgaggcc
agcaagctgcagcagttcttccgggagctggatgacttccaatcatggctgtccaagacc
cagacggccatcgcttcagaagacatgcccaacacactgactgaggccgagaagcttctg
gcgcagcacgagggcatcaagaacgagatccgcaactacgaggaggactaccagaagatg
agggacatgggtgagatggtgacccagggccagacggacgcccagtacatgttcctgagg
cagaggctgcaggccctcgacacgggctggaacgagctgcacaagatgtgggagaaccgt
cagaacctactgtcccagtcccatgcccaccagctgttcctcagggacaccaagcaggct
gaggccttcctcaacaaccaggagtatgtgctggcccatacagagatgcccaggactctg
gagggggcggagggagccattaagaagcaggaggacttcatgaccaccatggacgccaac
gaggagaagatcaaagctgtggtggacaccggacgcaggctggtcagcgatggaaatgtc
aacgctgaccgcatccaggagaaagtggactctatcgatgagagacataagaagaaccgc
atgatggccagtgagcttctctgtaagctgaaggataacagagacctgcagaagttcctc
caggactgccaagagctctccctgtggatcaatgagaagatgctcacagctcaggacatg
tcgtacgacgaagccagaaacctccacagcaaatggctcaaacaccaggcgttcatggcc
gagctgcagtcaaacaaggagtggctggacaagatcgagaaggatggaatgcagctgatg
gctgagaagccggagaccgagtccatggtaaaggaaaagctggcagcgctccataagatg
tgggatgacctggagtccaccacccagaccaaggccaagtgtctgtttgatgccaacaag
gccgagctgttcacccagagctgtgccgacctagacaagtggctggtaggagtggatgga
cagatccaatcagacgactacggcaaagatctgaccagtgtcaacatcctgctcaagaaa
caacagatgctggagagccaggtggaggtgcgtcagaaggaggtggaggagctgcagagc
caggcccaggtcctcagccaggaggggaaggatacggacgaggtggacggccagcgccgc
atcgtggagaagaagttccagcagctgctggaccctctacggaagaggaagggaaacctc
atggcctcccgcgagatccaccagttcaacagagacatggaggatgagatcctctgggtt
gaagagcgaatgccacttgcaatatcaacagaccacggaaacaacctgcaaacagtccag
ttactcatcaagaaaaaccagaccctgcagaaggagatccagggccaccagccccgttgt
gatgacatctttgagcggagcctgcaggtcctcaaggatgatgacgacagcctcagcggc
gaggagatccaccagcggctggccgacctgcggcgcctgtgggcccagattctggaggag
acgggcaaacgccatggacgcctggaggaggcccacatggcccaacagtactactttgat
gctgctgaagccgaggcctggatgagcgagcaggagctctacatgatgtcagaggagaaa
gctaaggatgagcagagctctgtggccatgttgaagaagcaccagatactggagcaggct
gtggaagactacgctgaaactgtccaccagctgtcccagacaagtagaggcctgacggcc
gccggacaccctgaaagtgagcggatcggcatgcgtcagtcccaggtggataagctgtat
gcagggctcaaggacctgtcggaggagaggagggggaagctggacgagaggttccgtctg
ttccagctcaacagggaggtggatgacctggagcagtggatcgctgaaagggaagtagtg
gctgggtcacatgagctgggacaggactacgaacatgtcacgatgcttcaggagcgtttc
cgtgagtttgctcgcgacacaggcaacatcggtcaggagcgtgtggacaccgtcaaccag
ttggcggatgagcttatcaactcagaccacaccgacgcggcaacaatcgcggagtggaag
gacgggctgaatgaagcatgggccgacctgctggagctaatcgacacacgcacgcagatc
ctggcggcttcctttgagctgcataagttctaccatgatgccaaggagatcctcaaccgc
atcctggacaaacacaagaagctgcctgaggagctgggccgagaccagaacacagtggag
accctgcagaggatgcacaccacctttgaacacgacatccaggccctggggacacaggtg
aggacgttgcaggaggatgctgtgcgtctgcagtctgcctacgccggagacaaggctgat
gacatccaaaagagagagggtgaggtgctggaggcctggaggaccctgctggaggcctgc
gacggccgcagggtcagactgctcgacaccggcgacaagttccgcttcttcagcatggtg
cgagacctcatgctctggatggaggacgtcatccgcctcatcgaggctcaggagaagccc
agggacgtgtcgtccgtggagctcctgatgaacaaccaccaaggcatcaaggctgagatc
gacgcccgcaacaacagcttcaccaactgcatcgagctgggcaagtccctgttggcaagg
aaacactacgcattagaggagatcaaagagaagttactacagttgacagacaaaaggaaa
tgcatgattgacaagtgggaagacagatgggagtggctaagattggttctggaggtgcac
cagtttggtagggatgcgggtgtggctgagtcatggctgctgggacaggagccgtacctg
tccagcagggagatggggcagaacgtggacgaggtggagaaactcatcaagagacacgag
gcctttgagaagtccgctgccacctgggaggagcgcttctcagcgctggaacggctgact
acgatggaattactggaagtgagaagacagcaagaggaagaagagaggaagaggaatcca
ccacctgcagagacccagacggacgatgcatcgccacagcagagggagggtgagcaggtg
tctcagaacggactgccatcggaccaggactcccctcgggacaacggagaggaaagtgac
atcgttaatggggtggaggagcccagcccaggcgggtcgcccggtgaagcacgcaaggtc
aagcccagccaggctgccacactcccggccaagtcccaggactcagccccagccaaccag
atggaaggctacctgcaccgcaaacacgagtgggagggtcacaacaagaaggcatccagc
agatcctggcacaatgtgtattgcgtgatcaacaaccgggagatgggcttctacaaagac
cataagagtgccagccaggggatcccttaccacaaccagatccccatcagcctgaaggat
gctgcatgtgaggtcgccctcgactacaagaagaagaaacatgtgttcaaactgaaagct
acagatggcaatgagtatctcttccaagccaacgaggatgaggagatgaactcgtggatg
caagccatctccagcgctgcgtcctctgataagaccgagatgacccccagcagccatagc
acccccgcctccagccgagcccagaccctgcccgcctccgtcgccctggcaactgagtcc
agccctggcaagcgtgagaaagacaaagaaaagcgcttcagccttttcagcaaaaagaaa
tag
DBGET
integrated database retrieval system
