Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139412807
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Entry
139412807 CDS
T10872
Name
(RefSeq) fibronectin-like isoform X1
KO
K05717
fibronectin 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04810
Regulation of actin cytoskeleton
ocla04820
Cytoskeleton in muscle cells
ocla05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139412807
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139412807
09142 Cell motility
04820 Cytoskeleton in muscle cells
139412807
04810 Regulation of actin cytoskeleton
139412807
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
139412807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139412807
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139412807
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139412807
04990 Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
139412807
Membrane trafficking [BR:
ocla04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
ER-Golgi intermediate compartment (ERGIC) proteins
139412807
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of bladder cancer cells
139412807
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139412807
Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type I domain-containing proteins
139412807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
fn1
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
Fn3_Dep-1_2nd
fn2
NDNF
FN3_Tor_3rd
Arylsulfotran_N
Y_Y_Y
Cadherin_tail
Motif
Other DBs
NCBI-GeneID:
139412807
NCBI-ProteinID:
XP_071015630
LinkDB
All DBs
Position
7:complement(7271166..7306751)
Genome browser
AA seq
2492 aa
AA seq
DB search
MTGSPVTGLLVALCVSSAVHCMPKNQGKNKRQAQEQVYPELADTVPLAQGCDENGHSYRL
NDQWEKAYRGSTLLCTCNGAAGIKCKTKPQGEETCYDKYNDQTYPVGATYERAKDGMMWD
CTCIGSARGKISCTIGNRCHEGGRSYKIGDTWRRPHETGDYMLDCVCLGNGKGEWTCKPV
SERCYDNTGGASYVVGQTWEKPYQGWMMIDCTCLGEGNGRITCTSRNRCNDQDTKTSYRI
GDTWTKTDANRHQLQCLCTGNGRGEWKCERHSATTGTGVSTGTGVGTGTGSTRVTIQTEL
HQPSTLPEPPQEGACRTDSGATFHVGMRWIRTQGSKQMLCTCQGTGAVSCEEKEGQSQVY
GGNSEGQACVFPFVFMDKTYYSCTSEGRTDGQLWCSTTSDYHRDQQYSYCTEKNSLVSTR
GGNSNGALCQFPFLYNGRNYTDCTADGRRDGMRWCGTTTNYEGEQRYGFCPMAAHEEACT
TNDGVMYRVGDQWDKRHDVLGHMMQCTCLGNNRGEWSCIAYSQLKDQCIVDGLTYEVSQT
FTKLHDQGYMMNCTCYGQGRGRWKCDAIDQCQEPESRAFYQIGETWDKTIHQVLYRCYCY
GNGIGEMSCEPQQTFPGGHRPVQVIITEAGKQPDSHPIQWNAPASSHITQYILKWRVKNT
RAPWREATIPGNLNSYTIAGLRPGITYEGQLISILRYGRREVTRFDFTTTYGSLGVTSEG
ETTQPPPVVDTSESVTEITSSSFIISWVSASDTVSGFRVEYELSEDGAKPQVLDLPRTTT
SVSISDLLPGRRYNVNVYEVSPQGEPTLILTTSQTTAPDAPAEHQINQVGETSISISWSK
PQAPITGYRLVFTPSVEGSSTELILPDTETSVTLVDLRPGLLYNISIYAVEENQESEPMF
VQVNTAGEPAPEEVRSPTDLQFYEVSDVKIIITWTGPPSEVSGYRVTFAPVTPGDTPQRP
LQLPMTANTYAEITHLQPGTLYRFNIYAINGGVESEPLTGERATKPDAPTNLRFTDIGED
SVIVIWEAPRASISGYRLFLSVEGSSPTQKRIPGGQTQFPLRGLRPDTDYTVKLHSEQDN
VLSEEVNGIFTTSPKMGNAPRFTTDVTDTSIIISWTPVSRFSFRLSVRPSQGGESPRDVT
SDSGSIFVSGLTPGTEYTYSVQPIINGRDRGNPITKKVVTQLSPPTDLSTQSNADTGELT
VLWGGANTPDITGYRVTCTPTNGQRGTSLEELVQPVQNQLILENLSPGVEYNVSVYTVKD
NLESVPVSTTVTQDVPKLNDLDFVDVTDTTVGLRWTALVNVTAITSYRVTVMASGESLPI
IMDTVDSSTGHYTVRGLEPGVDYDISVTTITEEGESEPATRRTQTQTAVPAPTNLNFGGV
GPDHMRVSWTVPNVPTPSDITRFVIRFHPSSNDDDVKELNVGGATNTFLLQNLLPNTEYR
VSVVCVYEERESAPVTGTQRTTLDSPTGLDFADVLTNSFTIHWLAPGAVITGYRIHYQMT
SGGRAKDERLPPTRSHFTLTGLAPETEYNVEVYAVSGNQESLPLTGTQATISDAPTDLEV
TSTSPTSITIRWDAPSVTVRYYRITHGETGGESPAKEFTVPGSQSEATISNLNPGTDYTI
TVYAVTGRGDSPASSTPIYISHKTDVEGPTNMDVTDVKDNTITVRWSAAQGPIKGYRVTS
VPKNGQGPSFSEVVAPDQTEITFTGLMPTVEYVLSVTALGTDGEPSTPLVENAITAMDRP
KALSFSEVDSTSLRITWDSPDGTVTSYRVLYSSPEEGERELRPAPRGTDDTVVLRNLRPG
TEYTVKVIALHGRTPSTPLVGTQATAIPAPTNLDISEVGDTSFIVSWRSPSSGLSGYRVV
VNPKNNNGPTKEMTIAPDTTRAVVPGLMVATLYTVHVYALKNSVTSRPLEGEVTTLDNIS
PPRRVRISDVKDSAITLTWRAKVETITGYLIEAQPLGGSRPAIKKTIPGEQRTYTITGLE
PGTSYTIHIYTINGDARSAPFTLTATTAKPAVHSPTNLQFTSLTPNSISFSWEPPATRIT
GYYITYEEAGRAQPRELTPRPHAGQNYATISGLRPGTEYIIKIIALQNVQRSTPLVGTAR
TQRESLLTLPLPNRPGGYDHLDVPEEKESRVPTVVGNNGLDTLGGQGQNVEYTEYNNQNP
QTPYGNGQTPYGNGQTPLVFVPLPDAEGRRVPVVSVNVPGGSPFGFPEKDTGIPQEAQTQ
TTIAWKPYKQSSEYLVSCNPLTHVNEKMFQMRLPGTSTSATLIGLTSGASYNVIVEALKG
ALKHKILEEIVTAGNTLTEGSTGTDKDSCYDTFTATYHDVGTEWERMSETGFKLWCRCLG
LGSGHFRCDSSKWCHDGGNNYRIGEKWERQEEKGPMMSCTCLGNGKGEFKCEPHESTCYD
DGKMYQIGNQWQKEYLGAICTCTCYGGQQGWRCENCRRPGAEVDSSLLQPVRYRDPTNTL
RKVNIQCPIECLRPELLADALAEGHIPQNPLE
NT seq
7479 nt
NT seq
+upstream
nt +downstream
nt
atgactggtagcccagtgacagggctgcttgttgcgctgtgcgtaagcagcgcggtccat
tgtatgccaaagaaccaagggaaaaacaagagacaagctcaggaacaagtttaccccgaa
ctcgcagacacagtaccccttgctcaaggctgcgatgagaacggacattcttacagacta
aacgatcaatgggaaaaggcttaccgcgggagtacactgctttgtacctgcaacggagcg
gcagggatcaaatgtaaaacaaaaccccaaggggaggagacctgctatgacaaatacaac
gaccagacgtaccctgtgggtgcgacctacgagagggcgaaggacggcatgatgtgggac
tgcacctgcatcggttccgcccgcggcaaaatcagctgcacaatcggaaaccgctgccac
gagggaggcagatcctacaaaatcggggacacttggagaaggccccacgagaccggagac
tacatgctggattgcgtctgtctgggaaacggcaagggagagtggacctgcaaacccgtg
tcggaacgttgctatgacaacacaggtggagcatcctatgtggtggggcagacctgggag
aagccgtaccaaggctggatgatgatcgactgcacctgtctgggggagggcaacggacgc
atcacctgtacctctaggaaccgttgtaatgaccaggacaccaagacctcctaccgcatc
ggagacacatggaccaagacagatgctaacaggcaccaactccagtgtctgtgtacagga
aatggcagaggagagtggaagtgtgagagacactctgccactactggcacaggtgttagt
acaggaacaggtgtaggaacaggtacaggaagtactcgtgtgaccatccagacggagctc
caccagccctccaccctccccgaacccccccaggagggggcttgccgcacggactcgggc
gccaccttccacgtgggcatgcgctggatcaggacccagggcagcaagcagatgctgtgt
acctgccagggtactggcgccgtcagctgtgaggagaaggagggccagagccaggtgtac
ggtgggaactcagaaggccaggcctgtgtgttcccctttgtgttcatggataagacctac
tactcctgtacctcagagggacgtactgatggacagctgtggtgcagcaccacctctgac
taccatagagaccagcagtactcctactgtaccgagaagaactccctggtgtcgacccga
gggggtaactccaatggtgccctgtgccagttccccttcctctacaacgggcgtaactac
actgactgtaccgccgatgggcgccgcgacggcatgaggtggtgcggtaccacaaccaac
tacgaaggagagcagcgctacggattctgccccatggctgcccacgaggaggcctgcacc
accaacgacggggtcatgtaccgtgtgggagaccagtgggacaaacgccacgatgtcctg
ggtcacatgatgcagtgtacctgcttgggcaacaaccgcggagagtggagctgcatcgcc
tactcccaactcaaagaccagtgcattgtggatgggctgacctatgaggtgagccagacc
ttcaccaagctccatgaccagggctacatgatgaattgcacctgctatggacagggacgc
gggcgctggaagtgcgatgccatcgaccagtgccaggagcctgagagcagggcgttctat
cagattggagagacctgggacaaaaccatccaccaagtcctctaccgctgctattgctat
ggcaacggtattggtgagatgagctgcgagccacagcagaccttcccaggtggccaccgc
ccagtccaggtgattatcacagaggcagggaagcagcctgactcccaccccatccagtgg
aacgccccagcctcctcacacatcacccagtatatcctcaagtggagagtgaaaaacacc
cgcgccccctggagagaggccaccatcccaggtaacctgaactcgtacaccatcgctggt
ctgcggccaggtattacctatgagggtcagctgatcagcatcctgcgctatggacgccgc
gaggtcacccgctttgacttcaccaccacctacggctcccttggggtgacctctgagggt
gaaacgacccagcctcctcccgtggtggacacgtctgagtcggtgacagagatcacgtcc
agtagcttcatcatctcctgggtgtcagcctccgacaccgtgtcaggcttcagagtggag
tatgagctgagtgaggacggagccaaaccgcaggtcctggacctgccccgtaccaccacc
tctgtgagcatcagtgacctcctgcctggccgtagatacaacgtcaacgtgtatgaggtt
tcccctcagggagaacccaccctcatcctcaccacctctcagaccacagctcctgatgcc
cctgctgaacatcagatcaaccaggtgggagaaacctctatctccatcagctggtccaag
ccccaggcccccatcacaggctaccgtttggtcttcaccccgtcagtagagggcagcagc
accgagctcatcctcccagacactgagacatccgtgaccctggttgaccttcgacctggc
ctgctctacaacatcagcatttacgctgtggaggagaaccaggagagcgagcccatgttc
gtccaggtcaacacggccggagagccagcaccagaggaagtccgctccccgaccgacctt
cagttctacgaggtgtctgacgtgaaaatcatcatcacctggaccggccctcccagcgag
gtgtcgggttaccgcgtgaccttcgcccccgttacccccggtgacacgccccagaggccc
ctgcagctgcccatgacggccaacacgtacgcagagatcacccacctgcagcccggaacc
ctgtaccgcttcaacatctacgccatcaacggaggagtggagagcgagccgctgacggga
gagagagccaccaagcccgacgcccccaccaacctgcgtttcactgacatcggcgaggac
agtgtgatagtgatctgggaggctcccagggctagcatcagcggctaccgtctgttcctg
agcgtggagggctccagcccaacccagaagagaatccccggcggtcagacccagttccct
ctgcgaggcctccgccccgacacagactacaccgtcaaactgcactctgagcaggacaac
gtgttgagtgaggaagtcaatggcatcttcaccacctccccaaagatgggtaatgcccct
cgcttcaccactgatgtgaccgacacctccatcatcatctcctggacccctgtcagcagg
ttcagcttcaggctgtctgtgaggcccagtcagggaggagagtcacccagggatgtgacc
tctgactcaggaagtatctttgtgtcaggcctgacccctgggactgagtacacttacagt
gtacagcccattatcaacggacgtgaccgtggcaaccccatcactaaaaaagttgtcact
caactgtctccccccactgacctcagtacgcagtccaacgcggatacgggtgagctgact
gtcctgtggggcggcgccaacacgccagacatcacaggctacagagtgacatgcaccccg
accaatgggcagcgaggaacctccctggaggagttagttcagccggtccagaaccagtta
atcctggagaacctgagtccaggagtggagtacaacgtctctgtctacactgtcaaagac
aacctggagagtgtccctgtgtccaccactgtcacccaagacgtgcccaagctaaacgac
ctggactttgtcgacgtcaccgacaccactgtgggcctgcgctggaccgccctggtaaac
gtcaccgccatcaccagttaccgggtaacggttatggcgtcgggcgagagtttgcccatc
atcatggatacggtggactcgtcgacgggccattatacggtgcgcgggctggagcccggt
gtggattatgacatcagtgtcactacgataacggaggaaggggagagcgagccggccaca
cgcagaacgcaaacccagactgccgtccccgcccccaccaacctgaactttggaggggta
ggccccgatcacatgagggtcagctggaccgtccccaacgtccccacgcccagtgacatc
acacgcttcgtcatccgcttccaccccagcagcaacgacgacgatgtcaaggagctcaac
gtgggcggagccaccaacaccttcctgctgcagaacctgctgcccaacacagagtacagg
gtgagcgtggtgtgtgtttacgaggagagagaaagcgcaccagtcactggcactcagaga
acaaccctggactctcccactggcctggactttgctgacgtcctgaccaactccttcacc
atccactggctggcccccggcgccgtgatcaccggctaccgtatccattaccagatgacc
agcggaggcagggccaaggacgagagactgcccccgaccaggagccacttcaccctgact
ggcctggctcccgagacagagtacaatgttgaggtctacgctgtcagcgggaaccaggag
agtctgcctctcactggcactcaggctactatctctgacgcccccaccgacctggaagtg
acctcaaccagccccaccagcatcaccatccgctgggacgccccctctgtcaccgtgagg
tactacaggatcacccacggcgagacaggtggagaaagccctgctaaggagttcactgtc
cccggctcccagtccgaggccaccatctctaacctgaacccagggacagactacaccatc
accgtctacgctgtgacagggagaggggacagcccggcctccagcacacccatctacatc
agtcacaagactgacgtggagggccccaccaacatggacgtgacagatgtgaaggacaac
acaatcacagtgcgctggtccgcagcccagggccccatcaagggctacagggtcaccagc
gtccccaagaatggacagggcccctctttctctgaggtggtggcccctgatcagaccgag
attacgtttactggcttgatgcccacggtggagtacgttctgagtgtgaccgctctggga
accgatggagaaccttccacacctctggtagagaacgccatcacagcaatggaccgtccc
aaggccctgtccttctctgaggtggactccacctccctgaggatcacatgggacagtccg
gacggcacagtgacatcataccgcgtgctgtactccagccctgaggagggcgagagagag
ctgcgcccggcgcccagagggacagacgataccgtggtactgaggaatctccgccccggc
acagagtacactgttaaggtcatcgctctgcacggacgcacccccagcaccccactggtg
ggcacacaggccacagctatccctgctcccaccaatctggacatctctgaggttggtgac
acctccttcattgtctcgtggcgctcccccagctccgggctgtctgggtaccgtgtggtt
gtcaaccccaagaacaacaatggacccaccaaggagatgaccatcgccccagacaccacg
cgcgccgtggtcccaggactcatggtggccactctgtacacagtgcacgtttacgccctg
aagaactctgtgaccagccggcccctggagggagaggtcaccacgctggacaacatcagt
cctcctcggcgtgtgcgtatctctgacgtgaaggactcagccatcacgctgacctggcgt
gctaaggttgagaccatcaccgggtacctcatcgaagctcagcccctcggcggcagccgc
cccgccatcaagaagacaatccccggagagcagcgcacctacaccatcactggtctggag
ccaggcacctcctacactatccacatctacaccatcaacggcgatgcacgcagcgccccc
ttcaccctcacggccaccacagccaaaccagcggtccattctcccaccaacctccagttc
acctccctgacccccaactccatctccttcagctgggaaccccccgccacgcgcatcaca
ggatattacatcacctacgaggaggcaggcagggcgcagccccgtgagcttaccccccgc
ccccacgctggccagaactacgccaccatctctggtttgagaccaggtaccgagtacatc
atcaagatcatcgctcttcagaatgtccagagaagcaccccattggtgggcacggccagg
actcaacgtgaatccctgcttacactgccactccccaaccgccccggaggctacgaccac
ctggacgtgcctgaagaaaaggagagccgtgtcccaacagtagtaggtaacaacggccta
gacaccctggggggccagggccagaacgtggagtacactgagtacaacaaccagaacccc
cagacaccctatgggaacggccagacaccctatgggaatggccagacacccctggtgttt
gtgccccttccggatgcggaggggcgcagggtgccggtagtgagcgtgaacgtgcctggt
ggctctccctttggttttccagagaaggacacaggaatccctcaggaggcccagacccag
accaccatcgcctggaagccttacaagcagagttcagagtacctggtgtcctgcaaccct
ctgacacacgtcaacgagaagatgttccagatgcgtctgcctggtacctccaccagtgcc
actctgatcggcctgaccagcggagcctcctacaacgttatcgtagaggccctgaagggg
gcactcaaacacaagatcctggaggagattgtcaccgccggcaacaccctgacagagggt
tccaccggcacagataaggactcgtgctacgacaccttcacagcgacctaccatgacgtt
gggaccgagtgggagcgcatgtctgagacgggcttcaagctgtggtgcaggtgtctggga
ctaggcagtggacacttccgatgtgactcctctaagtggtgtcatgatggaggtaacaac
taccgtatcggggagaaatgggagcgtcaggaggagaagggccccatgatgagctgcacc
tgcctgggcaacgggaagggagagttcaagtgtgaaccacatgagtccacctgctatgac
gatgggaagatgtaccagattggtaaccagtggcagaaagaatacctgggagccatctgt
acctgcacctgctacggaggacaacagggctggcgttgtgagaactgtcgtagaccaggt
gctgaggtggactctagtctgctgcagcccgtccgatacagggaccccaccaacacacta
cgtaaagtgaacatccagtgccccatcgaatgccttcgacctgaactactggcagacgca
ctggcagaaggacacatcccccagaatcccctggagtaa
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integrated database retrieval system
