Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139412814
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Entry
139412814 CDS
T10872
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04140
Autophagy - animal
ocla04148
Efferocytosis
ocla05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
139412814
04148 Efferocytosis
139412814
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
139412814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139412814
Membrane trafficking [BR:
ocla04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
139412814
Hops complex
139412814
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
DUF740
Motif
Other DBs
NCBI-GeneID:
139412814
NCBI-ProteinID:
XP_071015642
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All DBs
Position
7:7502304..7514003
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AA seq
835 aa
AA seq
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MAFITANWNPLGEAFYRKIELYEMGWSLRDGLKECLVAAAPYGGPIALLRQPQRPSSSAR
PQLEIYSSSGANMASFPWKSGPVRQLGWTVCDDLLCIQEDGTVLIYDLFGAFKRHFSMGN
EVVQNQVLEAKVFHSPYGTGVAIVTGASRFTLATNIDDLKLRRLPEVPGLQGAPSCWVVL
TQDRQTKVLLANGADLYILDNTSCTPVTPPGLSPQACSIVNMAVSFSYKYLALFTDSGHL
WMGSANLKDKLSEVDTKVRTPPKQMVWCRRPKSQQPSVVIMWDRLLLVAGECTDTIQYTL
DEESVCVAELDGVRIVGGSRHELLQEVPSACQDIFKIASMAPGALLLEAHKEYEKSSQKA
DEYLREIKEQSVLGEAVRQCVEAAGYEHEPETQKTLLRAASFGKCFLSNYPPEAFVSMCR
DLKVLNSVREYTVGIPLTHTQYKQMTVQVLIDRLVYRKLYPLAIEICRYLKTPEYQGVSR
VLKHWACCKVQQKEEPDESIAHAVSVKLGEAAGISYSEIAARAYECGRTELAIKLLEFEP
RSGEQVPLLLKMKRSQLALSKAIESGDTDLVYTVVTYLKNEMNRGDFFMTLRNQPVALSL
YRQFCKHQEQDTLKDLFNQDDDHQELGNFYVKASYKEKKLEARLSLLQSAVDEYNKAKNE
FAAKATEEEMKLLRFQRRLDEEKGEALLGLSLQETLHALLTSNFHKQAEQLYRDFRVPDK
RYWWLKLTALAEKDDWEEMEKFAKSKKSPIGYLPFVEVCVKQHNKYEAKKYVSKVTPEQK
VKAHLAIGDLEGAAEAAIERRSEGEISTVLSRCSPTTDRALLERLNRARSTAAKK
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcatttataacggcaaactggaatccgctcggggaagcgttttacaggaagatcgag
ctgtatgagatgggatggagcttgagagatgggctcaaggaatgtctggtggcagcagcc
ccatacgggggaccgatcgctcttctaaggcagccacagaggccttcctccagtgcacgg
ccccagctggagatctattcctcctcaggcgcgaacatggccagcttcccgtggaagagt
ggcccagtgagacagctgggttggacagtgtgtgatgacctgctgtgtatccaggaggat
ggcactgtcctcatctacgacctgtttggtgccttcaaaagacacttcagcatgggcaac
gaggtggttcaaaaccaggtgctggaagccaaggtgttccactcaccctatggaactggt
gtcgccatagtaacgggagcctcacgcttcaccctggccacgaatattgacgacctgaag
ctgaggagactcccggaagtcccaggcctccagggggcaccctcctgctgggtagtgctg
actcaggacagacagaccaaagtgctgctggccaacggagctgacctctacatactggac
aacacatcctgcacccctgtgacccctccaggcctctctccacaggcctgtagcatcgtg
aacatggccgtgtcattcagctataagtacctggctctgttcacagactctggacacctg
tggatgggctcagccaacctcaaggacaagctgagtgaggtggacaccaaggtgaggacc
ccgcctaaacagatggtctggtgcagaaggccaaagagccagcagccctctgtggtcatc
atgtgggacaggctcctactggtggccggagagtgtacagacaccatccaatacactctg
gatgaggagagtgtgtgtgtagcagagctggatggagtgaggatcgtaggagggtccagg
catgagctgctgcaggaggtgccctcggcctgccaggacatctttaaaatcgcctccatg
gctcctggagctttactactggaggcacacaaggagtacgagaagtccagtcagaaggca
gatgagtacctgagagagataaaggaacagagtgtattgggggaagcggtgagacagtgt
gtggaggctgctgggtatgaacatgaaccagagacccagaaaacactgctcagggctgcg
tcctttgggaagtgttttctcagtaactacccaccagaggcgtttgtcagtatgtgtcga
gacctgaaagttctcaactctgtccgagagtacactgtggggatccccctcacacacaca
cagtacaaacagatgactgttcaggtcctcattgacaggttggtgtaccgtaagctgtat
cccctggccattgagatctgtcgctatctgaagacaccagagtaccagggagtcagcaga
gttctcaaacactgggcttgctgcaaggtccagcagaaagaagagcctgatgagtccata
gcacatgctgtcagtgtgaagctgggcgaggcagcaggaatctcctactctgagatcgct
gccagagcatatgagtgtggcaggacggaactggccatcaagttgttggagtttgagcct
cgttctggggagcaggtcccccttctactgaagatgaagaggagtcaactggccctgagt
aaagctatagagagtggagacacagacctggtttacacggtggtgacatacctgaagaac
gagatgaacagaggagacttcttcatgacgctcagaaaccaaccggtagctctgagcctc
taccggcagttctgtaagcaccaggaacaggacacactgaaggatctgttcaaccaagac
gatgaccatcaggagctgggtaacttctacgtcaaggccagttacaaggagaagaagctg
gaggctcgcctgtctctgctgcagagtgctgtggacgagtacaacaaggccaagaacgag
tttgcagccaaggcgacagaggaggagatgaagctgctacgtttccagaggcgtctggat
gaggagaagggagaggctctgctgggcctgtctctccaggagactctgcatgccctcctc
acctccaacttccacaagcaggctgagcagctctacagggacttcagggtgccagacaaa
aggtactggtggctgaagctgaccgctctggcagagaaggatgattgggaagagatggag
aaatttgccaagagcaagaagtcccccatcggctatctaccctttgtggaggtgtgtgtg
aaacaacacaataagtacgaggccaaaaagtatgtttccaaggtgaccccagagcaaaag
gtcaaagcccacctggccataggtgatctggagggggcagctgaggcagctatagagagg
aggagtgaaggagagatcagcactgtcctgtcccgctgttctcccaccacagaccgagcc
ctgctggagagactcaaccgagccagatccactgctgccaaaaagtga
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