Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139413002
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Entry
139413002 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1-like
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
139413002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139413002
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139413002
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
139413002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
zf-B_box
ANCHR-like_BBOX
fn3
zf-RING_UBOX
RING_XB3-XBAT31
TRIM_CC
zf-C3HC4_4
zf-C3HC4
PRY
zf-C3HC4_2
FN3_DSCAM-DSCAML_C
zf-RING_2
zf-C3HC4_3
Pur_ac_phosph_N
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
139413002
NCBI-ProteinID:
XP_071016061
LinkDB
All DBs
Position
7:18157887..18206705
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AA seq
685 aa
AA seq
DB search
MDALESELTCPICLELFEDPLLLPCAHSLCFGCAHRILVSHCASNEPVQSIGAFQCPTCR
YVISLSPQRGLEGLKRNVTLQNIIDRVQRATSSGPLALLPHSGPNSPSEDAGRFALALVP
ASTAMTSPGTPPSHVQCQFCEQDPPQNAVKTCVTCEVSYCDECLRATHPNKKPFTGHRLI
EPMPDCHLRGLQCLEHEEEKVNMYCVTDEQLICSLCKLVGRHRDHQVAALSDRFEKLKQA
LDSNLSHLVKRNNELEGLMGKLIQTCQHVEVNASRQEGKLMEECDLLIDIIQQRRQIIGT
KIKEGKAVRIRKLAQQISNCKQCIERSSALITQADQTLKETDHARFLQTAKSITERVSMA
TASSQVLIPEINLTDTFDTFALDFTKEKKLLESLDYLTAPSPPGIREELCTASYDTITVH
WTSDDEFTVLSYELQYAIFTGQANIVSLCNSADSWMIVPNIKQNHYTVHGLQSGTKYIFI
VKAINQAGARSSEPGTLKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETASKKGHGQERF
TSQSSYGVVGNVYIDSGRHYWEALIGGSTWYAVGIAYKSAPKHEWIGKNSASWVLCRCNN
SWVVRHNSKELAIEPSPHLRRVGVLLDYDAGSLSFYDAVGSQHLHTFHVSFAQPVCPVFN
VWNKCLTVLTGLPIPEHLEGLETQN
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgctggagtcagagctgacttgcccaatctgcctcgagctctttgaggaccca
ctgctcctgccctgtgcccacagcctttgcttcggctgtgcccatcgcatcctggtatcc
cactgcgcctccaacgagcccgtccagtccatcggagccttccagtgccccacctgccgc
tatgtcatctctctcagtccgcagcgtggcctagaaggactgaaacgcaacgtcaccctc
cagaacatcatcgaccgcgtccagagggccacctcctccggccccctggccctgctgccc
cacagcgggcccaactcccctagcgaggacgccgggcgatttgccctggccctggtcccc
gcctccaccgccatgaccagccccgggacgccgcccagccacgtgcagtgccagttctgt
gagcaggacccgccgcagaacgctgtcaagacgtgcgtgacatgcgaggtgtcatactgt
gacgagtgcctgcgtgccacgcaccccaataagaagcccttcacgggccaccgtctgatt
gagcccatgccggactgccacctgcgggggctgcagtgcctggagcacgaggaggagaaa
gtgaacatgtattgcgtcaccgacgaacagctcatctgctcgctgtgcaaactggtggga
agacaccgagaccaccaggtggcggccttgagtgaccgcttcgagaaactcaagcaagcg
ttggattccaacctgagtcatttggtcaagaggaacaatgagttggaggggttgatggga
aagttgatccaaacctgtcaacatgtagaggtcaatgcatcgcggcaggagggaaagctg
atggaagaatgcgacctcctgattgacatcatccagcaaaggagacagatcattgggacc
aaaatcaaggaggggaaggcagtccggatcaggaagctagcccagcaaatctccaactgt
aagcagtgcatcgaaaggtcctctgctctcatcacccaggccgaccagaccttgaaggag
acggaccacgcccgcttcctccagaccgccaagagtatcaccgaaagggtttccatggcg
accgcctcctctcaggtcctgattccagagatcaacctgacagacacatttgacacgttc
gctctggacttcaccaaggagaagaagctgctggagagcctggactacctcacagcgcca
agtcctccgggcatcagagaagagctctgcactgcatcgtacgacaccatcaccgtccac
tggacctcagacgacgagttcacagtgctttcctatgagctccagtatgctatcttcaca
gggcaagccaacattgtcagcctgtgtaactcagcagacagctggatgattgtgcctaac
atcaagcagaaccactacaccgtccacggcctgcagagcggcaccaagtacatcttcatc
gtcaaagccatcaaccaggcaggtgcccgcagcagtgagccagggacactcaaaaccaac
agccaacctttcaagctggaccccaagtccgcccacaagaagctgaaggtctcccatgac
aacctgacggtggagcgcgacgagacggcatcgaagaagggacacggccaggagcgcttc
accagccagagtagctacggcgtcgtcggcaacgtttacatcgacagcggacgccactac
tgggaggccctgattggaggaagcacatggtatgcggtgggcatcgcctacaagtcggcc
cccaagcacgagtggatcggcaaaaactcggcctcctgggtcctgtgccgctgcaacaac
tcgtgggtggtgcgccacaacagcaaggagctggccatcgagccttcgccccacctgcgc
cgcgtcggtgtcctgctggactacgacgccggctcgctttccttctacgacgccgtgggc
tcgcagcacctgcacacgttccacgtgtccttcgcccagcccgtgtgccccgtcttcaac
gtgtggaacaagtgtctgactgtactcacgggtctgcccatccctgaacacctagaaggg
ttggaaacccagaactga
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