Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139413007
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Entry
139413007 CDS
T10872
Name
(RefSeq) gamma-aminobutyric acid receptor subunit alpha-5-like
KO
K05175
gamma-aminobutyric acid receptor subunit alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04080
Neuroactive ligand-receptor interaction
ocla04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
139413007
04082 Neuroactive ligand signaling
139413007
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139413007
Ion channels [BR:
ocla04040
]
Ligand-gated channels
GABA-A
139413007
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
CytochromB561_N
Motif
Other DBs
NCBI-GeneID:
139413007
NCBI-ProteinID:
XP_071016071
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Position
7:19509381..19546962
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AA seq
471 aa
AA seq
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MMALSTDIEDKMPSFSTMKHVWISVLLVCITCHVGLGQTTAEALKEAEANDNITIFTRIL
DGLLDGYDNRLRPGLGEKVTEIKTNIFVTSFGPVSDTEMEYTIDVFFRQSWKDERLCFKG
PMEMLPLNNLLASNIWTPDTFFLNGKKSIAHNMTTPNKLLRLKDDGTLLYTMRLTISAEC
PMQLEDFPMDAHACPLKFGSYAYPVSEVVYLWQTGAAKSVVVAEDGSRLNQYHLIGQTAG
SEDIYTSRGQYTVMMCHFYLKRKIGYFVIQTYMPCFMTVILSQVSFWLNRESVPARTVFG
VTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRSWAWDG
KKAMEAQHPKKRDPMVLSKKPNNVCTAGVNYTPNITKDISISTISNSTSIQLRSSETEVL
DPKKTYNSVSKIDKMSRIVFPVLFGTFNLVYWATYLNREPVIKGVNILAPT
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgatggctctctctacagacatagaggacaaaatgcccagcttttctacaatgaaacac
gtgtggatctctgtcttgctggtgtgtattacatgtcacgtgggtcttggccagaccaca
gcagaagcattgaaagaggcagaggctaatgacaacatcaccatcttcacacggatactg
gacggactgctggacggctacgacaacagactcagaccaggacttggagaaaaggtcacg
gagatcaaaaccaatatatttgtcacaagctttggcccagtttcagatactgaaatggaa
tacaccatcgatgtgtttttccgacaaagctggaaagatgagcgcctgtgtttcaaagga
cccatggagatgctgcctctgaacaacctcctggccagtaacatctggaccccagacaca
ttcttcctcaacgggaaaaagtctatcgcccacaacatgaccacaccgaacaagctactg
agactgaaggatgacgggacgctgctctacactatgaggttaaccatatcggcagagtgt
cccatgcagttggaggacttcccaatggatgctcatgcttgccctttgaagtttggaagc
tatgcctatccagtctctgaggtggtgtacctctggcaaaccggtgctgccaagtctgta
gtggtggcagaagacggatcccgtctcaaccagtaccacctgattggccagaccgcaggc
tctgaggacatctacaccagtcgaggacagtacacagtcatgatgtgtcacttctacctg
aagaggaagattggttactttgtcattcagacatacatgccatgcttcatgaccgtgatc
ctgtcccaggtgtccttctggctcaaccgtgaatctgtaccagccaggaccgtttttggt
gtcactacagtgctgactatgactactctcagtatcagcgctcgcaactcgctgcctaag
gtggcctacgccacagccatggattggttcatcgctgtgtgctatgcgttcgtcttctcc
gcgcttatcgagtttgccaccgtcaactatttcaccaagaggagctgggcgtgggatggc
aagaaggccatggaggctcagcacccaaagaaaagggaccctatggtgctttctaagaag
cccaacaacgtctgtacagcaggagtgaactacacccccaacatcactaaggatatctct
atctccaccatctccaacagcacctccatacaactaagatcgtctgaaacagaagtcctg
gaccccaagaaaacctacaacagcgtgagcaaaatcgacaaaatgtcccggatagttttc
cctgtcctatttggaacctttaacctagtgtactgggctacttacctcaacagagaaccg
gtcatcaaaggagtcaacatattggctccaacatag
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