Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139413031
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Entry
139413031 CDS
T10872
Name
(RefSeq) desmin-like
KO
K07610
desmin
Organism
ocla
Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04519
Cadherin signaling
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
139413031
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139413031
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ocla04812
]
139413031
Cytoskeleton proteins [BR:
ocla04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
139413031
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Filament
Filament_head
DUF8429
ANG-1
ZK652
KIF21A_4th
Mua
COLEC12
TolA_bind_tri
DUF1664
CCDC89
CLIP1
CCDC192
WXG100
DUF7432
DUF7491
GeBP-like_DBD
Motif
Other DBs
NCBI-GeneID:
139413031
NCBI-ProteinID:
XP_071016119
LinkDB
All DBs
Position
7:20853462..20859256
Genome browser
AA seq
566 aa
AA seq
DB search
MRGSVLQIASESCVSLSQPPCSSPLQLPAQTLLLLQPRPFSCSSPDPSPAPAQNILLLQP
RLFSCSSPEHSPAPAQTLLHSTMSSYRSSAQSAQSGSSSYRRTFGTGYSPAMSHSLYSSR
GSGGGLGLGHGGSGHISSRVYEVTKTSASPSYSGYRTSSHFGGPVMSSTAHGSRSYAGMG
ETLDFSLADALNQEFLHTRTNEKVELQHLNDRFASYIEKVRFLEQQNATLVVEIERLRGR
EPTRIADLYEEEMRDLRRQVEALTNQRSRVEVERDNLGEDLDKLKLRLQEEILQREDAEN
NLAAFRADVDAATLARLDLERRIETLQEEIAFLKKIHEEEIREMQSQMQETQVQIQMDMS
KPDLTAALRDIRAQYEGIAAKNISEAEEWYKSKVTDLNQAVNKNNEALKEAKMETMEFRH
QLQSYTCEIDSLKGTNESLMRQMREMEERHGREAGGFQDTISRLEAEIANMKDEMARHLR
EYQDLLNVKMALDVEIATYRKLLEGEESRISLPIQNYSTMTFRETSPEHHHRVAESHSKK
SVLIKTIETRDGEVVSESTQHQQDIM
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgagggggtcggtactacaaatagccagtgagtcctgtgtgtccctcagtcagcctccc
tgctccagtccactccagctgccagcccagacccttctcctgctccagcccagacccttt
tcttgctccagcccagacccttctcctgctccagcccagaacattctcctgctccagcca
agactcttctcctgctccagcccagaacattctcctgctccagcccagacccttctgcac
tccaccatgagctcctaccgctcttctgctcagtcggcccagtctggctcctcctcctac
cgccgcacctttggcacaggatacagccctgccatgtcccattccctctacagcagccgg
ggctcgggcggggggctcggactcggacatggcggctccggccacatctcctcccgggtc
tacgaagtcaccaagacctctgcctcgccctcttactccggctaccgcacctcgtctcac
tttggtggacctgtgatgtcatcgaccgcccacggttcgcggtcctacgcggggatgggg
gagacgctggacttcagcctggccgacgcgctgaaccaggagttcctccacacgcgcacc
aacgagaaggtcgagctgcagcacctgaacgaccgcttcgccagctacatcgagaaagtt
cgcttcctggagcagcagaatgctacattggtggtggagattgagaggctgcgggggcgt
gaacccacacgcatcgccgacctgtacgaagaggagatgagggacctgcgtcgccaggtg
gaggccttgaccaatcagaggagccgcgtcgaggtggagagggacaacctgggcgaagac
ttggacaaactcaaactcagactgcaggaagagatccttcagagggaggacgcagagaac
aacctggctgctttcagagctgatgttgatgctgccactctggcccgtctagacttggag
agacgcatcgagacgctacaggaggagatcgccttcctcaagaagattcacgaggaggag
atccgtgagatgcagtcccagatgcaggagacccaggtgcagatccagatggacatgtcc
aagccggacctgacagctgccctcagggacatcagggctcagtacgagggcatcgccgcc
aagaacatctcggaggccgaggagtggtacaagtctaaggtgacagacctgaaccaggcg
gtgaacaagaacaatgaggctctgaaggaggccaagatggagaccatggagttcagacac
cagctccagtcctacacctgtgagattgactcacttaaaggcaccaacgagtctctgatg
aggcagatgagagagatggaggagcgccacgggcgggaggccggcgggttccaggacacc
atctcccgtctggaggctgagatcgccaacatgaaggatgagatggccaggcacctgaga
gagtaccaggacctgctcaacgtcaagatggccctggacgtagagatagcaacctacagg
aaactgctggagggagaggagagcaggatttccctgcccatacagaactattccaccatg
actttccgtgaaacgagcccagagcatcatcaccgcgttgctgagtcacactcaaagaaa
agtgtccttatcaagaccatcgagacccgtgacggagaggtggtctctgagtcaacacag
caccagcaggatatcatgtaa
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integrated database retrieval system
