Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139413199
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Entry
139413199 CDS
T10872
Name
(RefSeq) RNA-binding protein 39-like isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139413199
Spliceosome [BR:
ocla03041
]
Common components
Common spliceosomal components
General mRNP proteins
139413199
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_MUD2_C
RRM_occluded
DUF8400
RRM_7
RBD_DEAH11
PRP38_assoc
RRM_10
CDC45
Motif
Other DBs
NCBI-GeneID:
139413199
NCBI-ProteinID:
XP_071016402
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All DBs
Position
7:32377166..32430712
Genome browser
AA seq
534 aa
AA seq
DB search
MADDFDIEAMLEAPYRKDEIKHSSPNGHKERSKKKKKSRSRSRDRKRSKSRDRKKSHDHK
RSRSHERKRSRSRERRRSRERSGRYRDHKTTFSGPKFNGGSRGKIGPPPVIKLSRRRSRS
RSPFKKEKSPVRQVFLGEMTQKTSIRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFF
SAVGKVRDVRMISDRNSRRSKGIAYIEFVEANSVPLAIGLSGQRLLGVPIIVQASQVMAE
KNRAAAMANNLQKGNAGPMRLYVGSLHFNITEEMLRGIFEPFGKIESIQLMMDSETGRSK
GYGFITFSDTECAKKALDQLNGFELAGRPMKVGHVTERTDASNASSFLDNDELERTGIDL
GTTGRLQLMARLAEGTGLQIPPAAQQALQMGGAIAIGAMAAVSAAMNPAMNVNMNTAMNL
PSQPLATHCFQLSNMFNPRSEDNPGWDVDIQHDVIEECNKHGGVVHIYVDKNSTEGNVYV
KCPSVPAAMAAVNALHGRYFAGKMITAAYVPLPTYHNLFPDSVKATQLLIPLAH
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgactttgacatagaagcaatgcttgaggctccatatcgaaaggatgagatc
aagcacagtagtccaaatgggcacaaggaacgcagcaagaagaaaaaaaagagcaggagt
cgaagcagagacaggaagagaagcaaaagccgggatcgcaagaagagccatgaccacaag
cggagccgcagccacgagcggaagcggagccgcagcagggagaggcgccggagcagagag
cgcagtggccgctacagggaccacaagaccaccttctctgggccgaaatttaatggtggt
tccagagggaagattggccccccacctgtcatcaagctaagccgaagacgttccagaagc
cgaagccctttcaagaaagagaagagtcctgtgaggcaagtgttccttggggagatgacg
caaaagacctcaatcaggcagccaatagacaacctgactccagaggaaagggacgctcgc
acagtgttctgcatgcagctggcagccagaatccgaccacgtgacctggaggagttcttc
tctgcagtaggaaaggtgagagatgtgcgcatgatctctgacagaaattcgaggaggtcg
aaggggattgcttacatcgagtttgtggaggccaactcggtgccactggctataggattg
tctggccagcgacttctgggggtgccaataattgttcaggcctcacaggtaatggctgag
aaaaacagggctgctgccatggccaacaacctgcagaagggcaacgctggcccgatgaga
ctctacgtcggatccttacactttaacatcacagaggagatgctacgaggaatatttgag
ccttttggaaagattgagagtattcagctcatgatggatagtgagacggggagatccaaa
ggatatggcttcatcactttctcagacacagagtgtgccaagaaggctttggatcagttg
aacggctttgagctggctggccggccgatgaaggtgggccatgtgactgagcgcacagac
gcctccaacgccagctccttcctggacaacgacgagctggagaggacaggcatcgacctg
ggcaccactgggcgcctgcagctcatggccagactggctgaaggcacgggactgcagatt
cccccagcagcacagcaagccctgcagatgggtggggccattgctattggtgccatggcc
gctgtatcagctgccatgaatcctgccatgaatgtgaacatgaatacagctatgaactta
ccctcacagccacttgctacacactgtttccagctgtctaacatgttcaaccctcggtct
gaagataacccaggctgggatgttgacattcagcatgatgtcattgaggaatgcaacaaa
catggaggagttgtgcacatatacgttgacaagaattccactgaaggcaacgtgtatgtg
aaatgtccatccgttcctgctgccatggctgcagtaaacgcattacatggtcgatatttt
gcaggtaaaatgatcacagcggcatatgtccctctcccaacatatcacaaccttttccct
gactctgtgaaggctacccagctcctgatccctcttgctcactga
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