Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139413342
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Entry
139413342 CDS
T10872
Name
(RefSeq) contactin-3-like
KO
K06761
contactin 3/4/5/6
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139413342
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
ocla00537
]
139413342
Cell adhesion molecules [BR:
ocla04515
]
Immunoglobulin superfamily
Contactins
139413342
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
ocla00537
]
Others
139413342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_5
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
C2-set_3
Pox_C7_F8A
Motif
Other DBs
NCBI-GeneID:
139413342
NCBI-ProteinID:
XP_071016687
LinkDB
All DBs
Position
7:43039025..43092073
Genome browser
AA seq
1031 aa
AA seq
DB search
MMLLWKQLVLLSIIGCLAAHAQDVLFQGPRWRTEPSDLILPINFPDQEATIRCEAEGNPT
PQYRWSLNGTLIDLGSDYRRHMSGGNLIVNRLDRDQDTGIYQCTAFNTWGTILSRRATLK
FAYLDNFKTQTTRSAVSVREGQGVVLLCGPPMHSGELTFAWIFNEYPYFVQQDSRRFISQ
ETGSLYIAKVEPSDVGNYTCVVNNSITKGKVLSSPTPLVLRNDGAMGEYEPKIEVHFPDT
VPAAKGSTVKLECFALGNPVPEISWRRTSGVPFPSKVKMKNSNAVLEIQNFQQEDTGTYE
CVAENSRGKNAARGRISFHAKPHWLQTMIDGALSIEENLFWECKANGKPKPSYSWLKNGD
NLMAEGRRQIENGALSIAALNLSDTGMYQCVAENKHGIIYSSAELMVLASPPSFSKNPLK
ALLKARSGSDVALECKPQASPRAISLWKKGNEIVQRNERITLLPNGTLKIANVTRRDAGS
YTCIAKNPFGTASTTGRLFITEPTRITQRPANMEIIVGESIVLPCQIASDPALDVSFSWA
FNGQLIDFHGDADHFDRVGGSLSGDLMIRNIQLNHGGKYVCVINTDVESLSASAILVVKG
PPGPPDTVAVEEITDSTAQLSWKPGRDNGSPITGYIIQARTPFTVGWQAVDTVPEEINGN
TLTATVVGLNAWVEYEFRVVARNSVGMGEPSPASAKTRTEDAMPDTAPTDVGGGGGTKSE
LVITWEPVPEELQNGEGFGYIIAFRPLGAVTWTRVVISTPGVARYVFRNDTIPAFSPFDV
KVGAYNNRGEGPFSSIATVFSAEEVPSEAPKRVWGRSVSAAQIEVIWEALPATPERVLGY
EVVYWEDDTKPDTVGKVRISANYSAVNVTGLKANTQYYLALCTFNTAGTGPQSTPINATT
KKPPPGQPPLNVEWTMIGSLLTLHWDPVIAMETEAEVIGYLVLLRRHRDNEVNSIMTNKT
RLELTLSSNDNYLIQIKALSEGGEGVGSEPIHIHKLSMGAQGSGASRLSLLSPSHLSAVL
VSALILLSSSW
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgatgttactatggaaacaacttgtgctgctatcaatcattggttgccttgcagctcat
gcacaagatgtcctgttccaagggccaagatggaggacagagcccagtgacctcattctc
cccatcaacttccctgaccaggaagctaccattagatgtgaggcagaggggaaccccacc
ccacagtacagatggtcgcttaacggaacactcattgatctggggagtgactaccggcgt
cacatgtctgggggcaacctgatcgttaaccgtctggacagggaccaagacacggggata
taccagtgcactgccttcaacacatgggggaccatcctcagccgcagagccactctgaaa
tttgcatacctagataacttcaagacccaaacgacacggagtgccgtcagtgtccgggag
ggccaaggagtggttttgttatgtggaccacccatgcattctggagagctgacatttgca
tggatcttcaatgagtacccatactttgttcagcaagacagtcgtcgattcatctcccag
gagacaggaagtctgtacattgctaaagtggagccttctgatgtgggaaactatacctgt
gtggtcaacaacagcatcactaaggggaaagtcctcagctctcctacaccactggtcctg
aggaatgatggagcaatgggtgaatatgaacccaaaatagaagttcatttccctgacact
gttccagctgcgaagggatccacggtgaaactggaatgtttcgctctgggaaacccagtc
ccagaaataagttggaggagaaccagtggcgtcccgtttcccagtaaggtgaagatgaag
aactccaacgcagtccttgaaattcaaaatttccagcaggaagacactgggacgtatgag
tgtgtggcagaaaatagcagaggcaaaaacgctgcacgaggtcgtatctccttccatgcg
aagccccattggctccagacaatgatcgacggggccctgtccattgaggagaatctgttc
tgggagtgtaaggctaacgggaagcccaagccctcctacagctggctgaagaatggagac
aacctaatggcagagggccggagacaaattgaaaacggggctctctccatagcagcatta
aacctgtcagacaccgggatgtatcagtgtgtggctgaaaacaaacatggcattatttat
tccagcgctgagctaatggtgttagcatcacctcccagtttctccaagaatccactgaag
gccctgctaaaagctcgctcaggcagtgatgtggctttggagtgcaagccccaagcctcg
ccccgggcaattagcctgtggaagaaaggcaatgagattgtgcagagaaacgagaggatt
actctgctccccaacgggacactgaagattgccaatgtaaccaggagggatgcgggaagc
tacacgtgcatcgctaagaatccgtttggaactgcaagcaccactggaaggctgtttatc
acagagcccaccagaatcacccagcggcctgctaacatggagatcattgttggcgaaagt
atcgtgctgccctgccagatagccagcgatccagccttggatgtgtctttctcctgggcc
ttcaacgggcagctcatagacttccatggggatgccgaccatttcgacagagtaggaggg
agtctctcaggagatctgatgattcgtaacatccagttgaatcacgggggaaagtatgtc
tgtgttatcaacaccgacgtggagagcttgtctgcttcagccatcttggttgtgaaaggt
ccccccgggcccccggacactgtagcggtggaggagatcacagatagcacagcccagctc
tcctggaaacctggtagggacaatggcagccctatcaccggctacatcatccaggccagg
acacccttcactgtgggctggcaagctgtagacacagttcccgaggaaatcaatggcaac
acgttgacagccactgtagtgggtctgaatgcctgggtggagtatgagttccgggtggtg
gcccgcaacagtgtgggcatgggagagcctagtccagcctcagccaagaccaggacagag
gatgccatgcctgatacagctcccactgatgttggaggtggaggcggcacaaaatctgaa
ttagtgataacttgggagcccgtgcctgaggaactgcagaatggagagggcttcggttac
atcatcgccttccggccactgggtgctgtcacttggacgcgagtggtcatctccacgcct
ggggtcgcccgatacgtcttccgcaacgacaccatcccggccttctctccgttcgatgtg
aaggttggggcgtacaacaaccgcggggaggggcctttcagttccatagccacagtgttt
tcagcagaggaagtccccagtgaggctcctaagagggtttggggcaggagtgtgtctgca
gctcaaattgaagtcatctgggaagccctccctgccacccctgaaagagtgctgggttat
gaggtggtgtattgggaagatgacaccaagcctgacacagtaggcaaagtgagaatctct
gctaactactcagcagtcaacgtgactggactgaaagccaacacacagtattacttggct
ttgtgtacctttaacactgctgggacagggccacagtctacacccataaacgccaccacc
aagaagccaccacctggccagcctcctctgaacgtagagtggaccatgattggctctctg
ctcactctgcactgggatcctgtcatagccatggagacggaggcagaggtcatcggatat
cttgtgctgttgagaagacaccgggataatgaggtaaacagcatcatgacaaacaaaacc
aggttggagctgacgctgtcttccaacgacaactacctgatccagatcaaggccctgagt
gagggcggtgaaggtgtgggcagcgaacccatccacatccacaaattaagcatgggcgca
cagggctcgggagcgtctcggcttagtctgctgtcgccgtctcatctctctgcagtcctc
gtcagtgctctcatcctcctcagctcctcctggtga
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