Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139413500
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Entry
139413500 CDS
T10872
Name
(RefSeq) poly(A) polymerase gamma-like
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139413500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139413500
Enzymes [BR:
ocla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
139413500
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
139413500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Nrap_D2
GH97_C
Motif
Other DBs
NCBI-GeneID:
139413500
NCBI-ProteinID:
XP_071017073
LinkDB
All DBs
Position
1:complement(84636242..84654652)
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AA seq
806 aa
AA seq
DB search
MKEMSANSNSMHGGQQPQKHYGITSSISMAFPREVDHQYTHKLSEAMKPFGVFEDEDELN
HRLAVLGKLNTFVKEWIAEISETKNLPPSAITNVGGKIFTFGSYRLGVHTKGADIDALCV
SPRHVERTDFFDSFFAKLKLHEEIKDLRAVEDAFVPVIKFKFDGIEIDLLFARLALQSIP
DNLDLRGDSHLRNLDIRCIRSLNGCRVTDEILYLVPNKENFRLTLRAIKLWAKRRGIYSN
MLGFLGGVSWAMLVARTCQLYPNAVAATLVHKFFLVFSKWEWPNPVLLKQPEDSNLNLPV
WDPRVNPSDRYHLMPIITPAYPQQNSTYNVSSSTRTIMSEEFKYGLSVTDDILQGKTDWS
KLFQPPNFFLKYKHYIVLTASASTEENQLEWIGLVESKIRVLVGNLERNEYITLAHVNPT
SFPGNKESCSENEFVSMWFIGIIFKKVENAESVNIDLTYDIQSFTDTVYRQANNINMLKD
GMKIEATHVKKKQLHQYLPVELVQRKKRSIVELNRNSNGGSSKRSSLDGSQLDSSRDTDS
GTPFSSPTSVCKPSRPAASDTDDSLTPPKLPASLFVESSSSVPDVSPPMTDQEKGLSIPV
IGSKSKPSAPTGPVGSTIPTVVGRSVVSLGTTEQNQNGSKRLHSPTLEDQSKRLKDSAEP
VSPPAGSTIPTVVGRSVVPCLGSSRDTSSPTEQNQNGATAAAKRPHSPTQDGPPKRIRDP
ADLLVSGDDSAFKEPFPLSSDGQEQGDGVNVESLGGVKAMPIPTIDTSRTQRLPSMELPD
VTSPLPSSNHQRVVKNSIRLALNRHR
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaatgtcagcgaacagtaacagtatgcatggcgggcagcagcctcagaaacac
tatggcattacctcatccattagcatggccttccccagggaggtggaccatcagtacaca
cacaagctcagcgaggccatgaaaccctttggggtgtttgaggatgaggacgaactcaac
cacagactcgcagttcttggaaagttgaatacatttgtcaaagaatggattgcagagatc
agtgaaacgaagaacctcccaccatcggcgataaccaatgtgggggggaagatcttcacc
tttgggtcttaccggcttggagttcacactaaaggggcggatattgatgccttgtgtgta
tcgccgcgacacgtggagaggacagacttcttcgactcattctttgcaaagctcaaactg
cacgaagagatcaaagacctacgggcggtggaggatgcctttgtacctgtgatcaaattc
aagtttgacggcatcgagattgacctgctgtttgcgcggctggctctgcagtccatccca
gataacctggatctgagaggagactcccacctgaggaacctggacatccgctgcatccgc
agtctcaatggctgcagagtgacagatgagatcctgtacttggtaccaaacaaggagaac
ttcagactaaccctgagggccatcaagctgtgggccaaacgccgtgggatctactccaac
atgttgggcttcctgggtggagtctcctgggccatgctggtagccaggacctgccagctc
taccccaacgctgtggccgccactctcgtacataagttcttcctcgtcttctccaaatgg
gaatggccaaatcctgtgcttttgaaacagcccgaagacagcaatctgaatctgcctgtt
tgggatccacgagtgaatccgtcagaccggtaccacctgatgcccatcatcacgccagcc
tacccccagcagaactctacctacaacgtctcctcttccacacgcaccatcatgagcgag
gagttcaaatacggtctcagtgttacagatgacatccttcaggggaaaaccgactggtcc
aaactgttccagccacccaactttttcctgaagtacaagcattatattgttctgactgcc
agtgcatccacagaagaaaaccaattagaatggattggtctggtggagtctaagatccgt
gtcctggtggggaacctggagaggaatgagtacatcaccctggcacacgtcaaccccaca
tccttccccgggaacaaggagagctgtagcgagaacgagtttgtctccatgtggttcatt
gggatcatcttcaagaaagtggagaacgcagagagtgtcaacatcgacctgacctacgac
atccagtccttcacagatacagtttacaggcaggccaacaacatcaacatgctgaaggat
gggatgaagatcgaagcgacacacgtgaagaagaagcagctccaccagtaccttcctgtt
gagctggtgcagaggaagaagaggagcatagtggagctgaaccggaactccaacggcggg
agttccaagcggtcctctctcgacggcagtcagctggacagttccagagacactgactcc
gggactcccttcagctctcccacctccgtctgcaagccgtccaggccggccgcctcagac
acagacgacagtttgacaccccccaagctgccagcctctctgtttgtggagagcagctcc
tcggtgccagacgtctctccacccatgaccgatcaggagaaggggttgtccatccccgtc
attggatcaaagtccaagccctctgccccaacgggcccagtcggtagcaccattcctacg
gtagtgggtaggagcgtggtctctctcggcactacagagcagaaccagaacggatccaag
agactccactcccctacgctggaggatcagtccaagaggctgaaagacagcgcagagccg
gtgagtcctccagcaggcagcaccattcctacagtagtaggcaggagcgttgtaccctgc
ctgggctcctctagagatacatccagcccgacagagcagaaccagaacggagccactgct
gcagccaagagacctcactcccccacacaggacggaccccccaagaggatacgagaccct
gcagatctgctggtgtccggtgatgactctgcattcaaggagccgttccctttgtctagc
gacggccaggagcaaggggacggagtgaacgtcgaaagtcttggaggggtaaaggctatg
cctattccaactatcgacacatcaagaacacagagacttcccagtatggagctgccagac
gtgacctctcccctccccagcagtaaccaccagcgggtggttaagaactccatcagacta
gccctcaacaggcacaggtaa
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