Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139413521
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Entry
139413521 CDS
T10872
Name
(RefSeq) SWI/SNF complex subunit SMARCC2-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03082
ATP-dependent chromatin remodeling
Brite
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
139413521
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
139413521
PBAF complex
139413521
GBAF(ncBAF) complex
139413521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139413521
NCBI-ProteinID:
XP_071017114
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All DBs
Position
7:56851120..56870452
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AA seq
1062 aa
AA seq
DB search
MAVRKKDGGPNVKYFETSDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTRLPMKSFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSDIEAKLLGKLKDIIKRHQGSVTEDKTCSSHVVVP
IPASLEEEEWVRPVMKRDKQVLLHWGYSPDSYDTWISASEVEAAVEDPPSPEKPRKVHAK
WILDLDQFNEWMNEEDYEVGEGGPKRKRISAKTLTDEVTTPGDERRDKKPGSAKKRKRSP
SPSPTPTSQESKKKNTKKGPTTPYTKSKRGQREEEPEDLTKDLDEPSPVPAVEEVTLPKT
ANTKKDSELTPVKGGTMTDLDEQEDESMETAEKEEEEGSPSVKGEPVKGSDLHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSS
LVPLQPKASQTPAAQQILSFPDKVKEKQPADLQNFGLRTDMYSKKTGPPKSKTAANAMRD
WTEQETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDMSSSLGPLA
YQPVPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVE
EAARASGRQDPLYGLEGSGIAGTSLEEGDKPEESSEESKSDSQSSEEKRETKENKDGAME
EDEKQGENGKKEEERGREGEGERDRESEKTETEMGEREKEKEGKEALEEGQREGESEGER
KAKVERDVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRH
FEELETIMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQQHSQTGGP
HPAPAPTGPPPQGPSATQSQPAPSIPAPQPAPSPAPSASSVPMTGPSSAQAQPTEPQPIP
SGPHSSPPRPPGHSSTNTTPTLHESSAPGDTLHSSTAAPTPQ
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaacgtaaaatatttcgaaacgtctgatacc
gtctcgcaattcgacaatgtccgcgtttggttgggcaagaattataaaaagtacatccag
gcggagccccccaccaacaagtctctgtccagcctagtggtccagctactgcagtttcag
gaggaggtgttcggaagacatgtcagcaacccacctctcaccaggctgccgatgaagagt
ttcctggactttaagtctggtggggctctctgccacattctggcagcagcctacaagttc
aagagtgatcagggctggcgcaggtttgactttcagaatccttctcggatggaccgcaat
gtggagatgttcatgactatcgagaaatccctggtacagaacaactgtctgagtcgacca
gtgatctacctgagctctgacattgaggccaagctgctggggaaactgaaggacataatc
aagaggcaccagggctcagtgactgaagacaagacatgcagctcccatgtggtggttcca
atccctgccagtcttgaggaggaggagtgggtgcgtccggtgatgaagagagacaagcag
gtgctgctccactggggatactctcctgacagctatgacacctggatctcagccagtgag
gtggaggcagctgtggaagatccgcccagcccagagaaacccaggaaggtccatgccaag
tggatcctggacctggaccagtttaatgagtggatgaatgaggaggactatgaggtcgga
gaggggggccccaagaggaagaggatctcagccaagaccctgacggacgaggtgaccacc
ccaggggacgagcgccgggacaagaagcccggcagcgccaagaagaggaagcgctcaccc
tccccctcgcccactccaacatcccaggagagcaagaagaagaacaccaagaaagggccc
accaccccgtacactaagtctaagcgaggccagagagaggaggagccagaggatctgact
aaagatctggatgaaccatcacctgtacctgctgtagaggaggtcaccctacctaagaca
gccaacactaagaaagactctgagttgacaccagtgaaaggaggtaccatgacagacctg
gatgagcaagaggatgaatccatggaaactgcagaaaaggaggaggaggagggctctccg
agtgtgaagggagagccggtgaaagggtcggacctccatgaggacaacgtgactgagcag
acccaccacatcatcatccccagctacgctgcatggtttgactacaacagtgtccatgct
attgagcgcagagccctcccagagtttttcaatggcaagaacaaatccaaaacccctgag
atttacctggcctacaggaacttcatgattgacacgtacaggctgaacccgcaggagtac
ctcacctccaccgcctgtcgtaggaacctggccggagacgtgtgtgccatcatgagggtg
catgcattcctggagcagtggggtctgatcaactaccaggtggactcagagagccggccc
acccccatgggccccccgcccacctcccacttccacgtcctggctgacaccccttccagc
ctggtgcccctgcagcccaaggcatcccagactccggcggcccagcagattctgtcattc
ccagataaggtgaaggagaagcagccagccgacctgcagaactttggcctgaggacagac
atgtacagcaagaagactgggcctcctaagagtaagactgctgccaatgccatgcgagac
tggaccgaacaggagacactactgctgctagagggtctggagatgtacaaggatgactgg
aacaaggtgtcagagcacgtgggctcacgtacccaggatgagtgtatcctgcacttcctg
cgtctgcccattgaggacccatacctggaggacatgtcctcgtccctgggccccctggcc
taccagcccgtccccttcagccaggcaggcaacccggtcatgagcaccgtggccttcctg
gcctccgtggtggacccccgcgtggcctccgcagccgccaagtctgccctggaggagttt
tcccgtatgaaggaggaggtcccagcagcactggtggaggcccatgtgaggagggtggag
gaggcggcgcgggccagtggcagacaggaccccctctacggcctggagggcagcggcatt
gcaggcaccagcctggaggaaggagacaaacctgaagagagcagtgaggagagtaagagt
gacagccaatccagtgaggagaagagggagaccaaggagaataaagatggagccatggaa
gaggatgagaagcaaggagaaaacgggaagaaggaggaggagagagggagagagggagaa
ggagagagggaccgagagtctgagaagacagagacagagatgggtgagagagagaaggag
aaggaagggaaggaggccttggaggagggccagagagaaggagagagcgagggcgaaagg
aaggcgaaggtggaacgggatgtgggagaggggaacctggctaccgctgctgcctctgcc
ctggctgctgctgccgtcaaagccaagcacctggctgcggtggaggagagaaagatcaag
tctctggtggctctgctggtggagactcagatgaagaagctggagatcaaactgagacac
tttgaagagctggagactatcatggaccgagagagggaggctttggagtaccagaggcag
cagctgctggcagatcgtcagtcattccacatggagcagttgaagtatgcagagatgagg
gcgcgtcagcagcacttccaacagatccagcaccagcagcatagccagactggaggccca
caccccgccccggctcccacgggccccccaccccagggcccctcagccacccagtcccag
ccggcccccagtatccctgcgccacaaccagctcccagcccagcaccctctgcctcctcc
gtccccatgacaggcccctcctctgcccaggcccagcccactgagccccagccaatcccc
agtggtcctcactcctcacctccccgcccgccaggccactccagcaccaacaccacccca
acactccacgagtccagcgcccctggggatacactccactcctcaaccgctgctcccact
ccacagtga
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