Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139413586
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Entry
139413586 CDS
T10872
Name
(RefSeq) retinoic acid receptor gamma-like isoform X1
KO
K08529
retinoic acid receptor gamma
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139413586
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ocla03310
]
139413586
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
139413586
Nuclear receptors [BR:
ocla03310
]
1. Thyroid hormone like
1B. Retinoic acid receptor (RAR)
139413586
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GFIT
Motif
Pfam:
zf-C4
Hormone_recep
RNA_pol_3_Rpc31
Motif
Other DBs
NCBI-GeneID:
139413586
NCBI-ProteinID:
XP_071017213
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Position
7:60923781..61002734
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AA seq
492 aa
AA seq
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MATNRERQVSHMTGFSPAVYPFAFNSMRSHSPFDLLANSSLFGRFGADLPKEMAALSVET
QSTSSEEMVPSSPSPPPPPRIYKPCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYT
CHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKDVKEEVVLLESYELSG
ELEELVNKVSKAHKDTFPSLVQLGKYTTNSSADHRVQLDLGLWDKFSELSTKCIIKIVEF
AKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF
GPLTELVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPQKVDKLQEPLLEALKIY
ARRRRPNKPHMFPRMLMKVTDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEAFED
SSDSGDSASAPPAIQAIKKEREEKSLEEEDEDEEDEWGDEERERGADSDGEPWGEAAAAE
AVSQKGATGRSQ
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaacagggaacggcaggtgagtcacatgactggcttttcacctgctgtttac
cccttcgccttcaactccatgaggagccactcacctttcgaccttctggccaatagcagc
ctctttggacgttttggggcagaccttccgaaagaaatggctgcattgtcagtggagacc
cagagcaccagctctgaggagatggtgcccagttcaccctctccaccccctcctccccgc
atttacaagccctgtttcgtgtgccaggacaagtcctctggctaccactatggggtcagc
tcctgtgagggttgcaagggattcttccggcgcagtattcagaagaacatggtgtatacc
tgccaccgagacaagaactgtcagatcaacaaggtgacccgtaatcgctgtcagtactgc
cggctgcaaaagtgctttgaggttggcatgtccaaagaagcggtgcgtaatgacaggaac
aagaagaagaaggatgtgaaggaggaggtggtgttgctggagagctatgagctcagtgga
gaactggaagagctagtcaacaaagtcagcaaggcccacaaagatacctttccctcactt
gtccagctgggcaaatacactacaaactccagtgcagaccaccgtgtacagttggatctg
gggctgtgggataagttcagtgaactctccaccaagtgcatcatcaagatagtggagttt
gccaagcgcctgccaggcttcaccaccctcaccatcgctgaccagatcactctcctcaaa
tcagcctgtctggatatactgatgctgaggatctgcactcgctacactccggagcaggac
acaatgaccttctccgacgggctgaccctgaaccggacccagatgcacaacgcaggcttt
ggccctctcacagagctggtgtttgcctttgctggccagctgctgcctctggagatggac
gacacagaaaccggcctcctcagcgccatctgcttgatctgtggagaccgtatggacctg
gaggagccccagaaggtggacaagctacaggaacccctcctggaggccctgaaaatctac
gcccgccgcagacgccccaacaagccccacatgttcccccgcatgctgatgaaggtcacc
gacctcaggggcatcagcaccaagggtgctgagagagccatcactctgaagatggagatc
ccaggccccatgcctcctctgatcagggagatgctggagaaccccgaggcctttgaggac
agcagcgactctggggacagcgcctccgccccccctgccatccaagccatcaagaaagag
agggaggagaagagcctcgaggaggaagatgaggatgaggaggacgagtggggggacgag
gagagggagaggggtgcggacagcgatggggagccctggggggaggctgcagcggcagaa
gcggtgtcccagaaaggggcaactgggagatcccagtga
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