KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139413644
Entry
139413644         CDS       T10872                                 
Name
(RefSeq) E3 ubiquitin-protein ligase NRDP1-like isoform X1
  KO
K11981  E3 ubiquitin-protein ligase NRDP1 [EC:2.3.2.27]
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    139413644
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ocla04131]
    139413644
   04121 Ubiquitin system [BR:ocla04121]
    139413644
   03029 Mitochondrial biogenesis [BR:ocla03029]
    139413644
Enzymes [BR:ocla01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     139413644
Membrane trafficking [BR:ocla04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    139413644
 Autophagy
  Mitophagy
   PINK1-Parkin associated proteins
    139413644
Ubiquitin system [BR:ocla04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    139413644
Mitochondrial biogenesis [BR:ocla03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Parkin-dependent mechanism factors
    139413644
SSDB
Motif
Pfam: USP8_interact zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_6 zf-C3HC4_4 zf-rbx1 zf-Nse zf-RING_UBOX Sina_ZnF zf-C3HC4_3 zf-RING_5 U-box zf-TRAF zf-RING_10 LXG zf-ANAPC11 SlyX Laminin_II zf-RING_16 DUF641 zf-TRAF_2 DUF4795 BLOC1_2 Sos7
Other DBs
NCBI-GeneID: 139413644
NCBI-ProteinID: XP_071017371
LinkDB
Position
7:62663722..62676246
AA seq 421 aa
MWSRESRKKWISCWHANPNTDANTHFSRTSLPRPQVAHFLPIILPQWSLISMSRRAVDSG
PRKKRHRLGSIPLSWVKGRTQDPLRESHIPGRTDGCSWIWGCAMGYDVTRFQGEVDEDLL
CPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQICPVDRSVVTLAHLRPVPRIMRNMLS
KLQITCDNAGFGCTAVLRLDQLQSHLRDCQHNPKRPFQCEQGCGLEMPKDEVSSHNCIKH
LRSVVQQQQGKVTDLDKTAAEHKHQLAEQKRDIQLLKAYMRAIRSANPNLQNLEETIEYN
EILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLIDSGCPPSIVNDLIENAHERNWPA
GLATLETRQMNRRYYENYVAKHIPGKQAVVVMACENQHMGEDMILEPGLVMIFAHGVEEI
L
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgtggtcacgggaatcaagaaaaaaatggatatcgtgctggcatgctaacccaaatact
gacgcaaacactcatttttccaggacatcattacctaggccccaggttgctcatttcctt
cccataattctgccccagtggtccttaatttcaatgagtaggagggctgtggattctggc
ccaaggaagaaaagacaccggctgggatccattcctttgtcctgggtgaaaggcagaaca
caggatccgcttcgggaaagtcatattcctggtcgtactgatggttgtagttggatctgg
ggatgtgccatgggctacgacgttacccggttccagggggaagtggatgaggacctgctg
tgccccatctgcagtggagtcctggaggagcctgtgcaggcccctcactgcgagcacgcc
ttctgcaatgcctgcatcacccagtggttctcccagcagcagatatgccccgtggaccgc
agcgtggtgacgctggcccacctgcgccccgtgccccgcatcatgcgcaacatgctgtcc
aagctgcagatcacctgcgacaacgctggcttcggttgcaccgccgtgctgcgcctcgac
cagctgcagtcgcacctcagggactgccagcacaaccccaagaggcccttccagtgcgag
cagggctgcggactggagatgcctaaagacgaggtgtccagccacaactgcatcaaacac
ctgcgcagcgtggtgcagcaacagcagggcaaggtcaccgacctggacaagactgctgct
gaacacaagcaccagctagcagagcagaaacgggacatccagctgttgaaggcatacatg
agagccatccgcagtgccaaccccaacctgcagaacctcgaagagactattgagtacaat
gagatcctggagtgggtgaactccctccagccagcgcgcgtcacccgctggggcggcatg
atctcgacaccggacgctgtcctccaggcggtcatcaagcgctcactcattgacagtggc
tgcccgccttccatcgtcaacgacctgatcgagaacgcccacgagaggaactggcccgcc
ggcctggccacgctggagacgcggcagatgaaccggcgctactatgagaattacgtggcc
aagcatatccccgggaaacaagcagtggtggtgatggcctgtgagaaccagcatatgggt
gaggacatgatcctggagccaggcctggtcatgatcttcgcccacggggtggaggagata
ctatga

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