Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139413699
Help
Entry
139413699 CDS
T10872
Name
(RefSeq) protein polybromo-1-like isoform X1
KO
K11757
protein polybromo-1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
139413699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139413699
03036 Chromosome and associated proteins [BR:
ocla03036
]
139413699
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
139413699
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
139413699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
139413699
NCBI-ProteinID:
XP_071017477
LinkDB
All DBs
Position
7:complement(65771108..65785878)
Genome browser
AA seq
1628 aa
AA seq
DB search
MQMSSKRRRATSPSSSVSGGDFDDASSTPGSGRKRRRAFNVPTVDPIAVCHELYNTVRDH
KDDQGRLLCELFIRVPKRRNLPDYYEVVSQPIDMTKIQQKLKSDDYQDVEQLTADFQLMF
NNAKNYYKAESEEYKAACRLWELYVHIRNEFVQPGDGDEDDDDGEDMLDNPALSTEDETP
PSCLKEVLEQLLDAVVSYTDTSGRVISELFQKLPSKMHYPDYYAVIKEPIDLRAIAQRIQ
IGYYKSVTAMAKDVDLLAKNAKTYNEPGSQVFKDANTIKKVFIQRKTEIDHAEPTKTSVR
IRNRRSAQGDRLSAITLALQYGSESDEDALLSGSVHYDEGESEAECLSFSMDMGNPVFQL
YEAVRGGRNSQGQLLSEPFLQVPSRKEYPDYYQQVKQPIALQQIREKMKNGEYQSVEQMD
SDLTLMFENAKRYNVPNSAIFKRALRLQQILLMKKRELLRRGDEEDQDSILSSDTGTGSA
TKKKSHKKNVKKNRMKALYAAVTEAREAGTNRRLCDLFMVKPSKKDYADYYKVILEPMDL
KTMEHNIRSERYATEEALMDDMRLMFRNARHYNEEGSQVYDDADILEKIVKDKRKELGAS
PEEGTDNMGSPKLKLRKSGASPKKSNKYLTPLQQRLNELYDAVRNYTDGRGRRISTIFLR
LPSRAELPDYYSTIKRPIDMERLRSHMAGGRYQDVDALVEDFALMFNNACTYNEPESLIY
RDALLLHRVLLETRRLQEGVEEGGSPPAVGPLVRELIRSLFMSVLGHQDEEGRCYSDSLA
EIPAQDPASPEKPLLNFDVIRANVERGRYRRLDVFQEHMFEVLEKARRLHRTDSEIFEDA
VELQQFFIKIRDELCKNGEILLSPALSYTSKHMHSDVEQEKREKLPKEMEEDKLKREEEN
KEEGEKAEDPAGGGAGPERMYSQDCSFENSTYHVGDCVYVQLAEANRKPHIVCIERLWED
EAGEKWLYGCWFYRPGETFHLATRKFLQQEVFKSDYFNKVLVSKILGKCMVMFVKDYFKL
QPEGVRPEDVYVCESRYSARNKAFKKIKLWAVPAAVRFVPRDVPLPVVRVASMYAKRDQE
KLLAVADNGSRSIVDKEREDVPVEMTGGEPGCPYYDQLHYNNTWLKVGDCVYIQSHELIK
PRIGRIEKLWVRDGAAFFFGPIFIHPEETEHEPTRMFYRREVFLSNLEETCPMTCVIGKC
VVSSFKDYLSCRPTEVSEEDVLLCESRYIESEKQMKKFKGLKRFSLHAKVVDDEIYYFRK
LIVPQKEPSPLLNKKIEELEMKLADMDEGDEDLDDLEDEDEAPETPSMPIMQTPLASDLD
IMPYTPPQSTPKVKGVSKKDGAKRKMNMSGYILFSSEMRSVIKTRHPDFSFGELSRLVGT
EWRNLEAPKKVEYEERAARVVEQQERERAAQQQASPRAGTPVGAMMGMTPGPGMMGAYGP
PYGMPMQGPYEGFLGMGPIPPHHMGSIPPQHFQPGMPGYHPGMPHPGMMGPGMNGMQGSP
GGHHYMQQPGMQAPPPYPGMGQLGQPSHLQPTTPMFVAPPPKTQRVLHSEAYLKYIEGLN
AENNTVSKWDQSLKARRRDVHLSKEQESRLPSHWLKSKGAHTTMADALWRLRDLMLRDSL
NIRQAYNL
NT seq
4887 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatgagttcgaaaagaagaagggccacctctccctccagtagtgtgagcggaggg
gactttgacgatgcatcctccactcctggaagcggacgaaaaagacgaagagcctttaat
gttcctacagtagaccctattgctgtgtgccatgagttgtacaacactgtcagggaccac
aaggatgaccaggggaggctgctttgtgagctgttcatcagggtaccaaagagaaggaac
ctgccagactactatgaggtggtgtcccagcccatagacatgaccaagatccagcagaag
ctcaagtcagatgattaccaagatgtggagcagctcactgctgatttccagcttatgttc
aacaatgccaagaactactataaggctgagagtgaagagtacaaggcagcctgcaggctg
tgggaactctacgttcacatcaggaatgagtttgtgcagccaggggatggtgatgaagat
gatgacgatggtgaagacatgctggataatcctgctctctccactgaagatgagactcca
ccgagctgcctgaaggaggttttggagcagctgttggatgctgtggtgtcatacacggac
acatcaggacgggtcatcagtgagctctttcagaagctgccttccaaaatgcactaccca
gactactatgccgttatcaaggagcccattgatcttagagccatcgctcagagaatacaa
attgggtactacaaaagtgtcaccgccatggccaaggatgttgaccttctggcgaaaaat
gcaaaaacatacaatgaaccaggatctcaggtttttaaggatgctaacaccatcaagaag
gtctttatccagagaaagactgagatcgaccatgctgagcccactaagaccagtgtccgc
atcaggaaccggaggtcagcccaaggagaccgtctctctgccatcactctggctctgcag
tacggctcagagagtgacgaggacgccctgctctctggctctgtgcattatgacgagggt
gagtctgaggcggagtgcctgagcttcagtatggacatgggtaacccagtgttccagcta
tatgaggccgtgagggggggcaggaacagccagggacagctcctctctgaacccttcctc
caggtgccctccaggaaagaataccctgactactaccagcaggtcaaacagcccatcgcc
ctccagcagatcagggagaagatgaagaacggggagtaccagagcgtggagcagatggac
tctgacctcactctgatgtttgagaacgctaagcgctacaacgtgcccaactcggccatc
ttcaaacgggccctgcggctgcagcagatcctgctgatgaagaagagggagctgttgagg
agaggagatgaagaggatcaggacagcattctgtcctctgacacaggcactggcagtgcg
accaagaagaaaagccataagaagaatgtgaagaagaaccgtatgaaggcactgtatgct
gcagtgactgaagccagagaagcagggaccaaccggaggctctgtgatctgttcatggtg
aagccctccaagaaggattacgcagactactacaaggtgatcctggagcccatggatctt
aagaccatggagcataacatccgctcagagcgctacgccaccgaagaggcccttatggac
gacatgaggctgatgttccgcaacgcacgccactataacgaggagggatctcaggtttat
gatgatgctgacatcctggagaagatcgtgaaggacaagcggaaggagctaggagcttct
cctgaggagggcactgacaacatgggatctcctaagctcaaactaagaaagagtggcgcg
tctcctaagaagtccaataaatacctgaccccgctgcagcagcgcctcaatgagctgtat
gatgctgtgaggaactacacagacggcagggggcgacgtatctccaccatcttcttgcgc
cttccgtcccgcgctgagctgcctgactactactccaccatcaagaggcccatcgacatg
gagcgcctgcgcagccacatggcgggcggccgttatcaggacgtggatgcactggtggaa
gactttgccctgatgttcaacaacgcctgtacctacaacgagccagagagcctgatctac
cgcgacgctctgcttctccaccgcgtgctcctggagacccgcaggctgcaggagggagtg
gaggagggtggctcgccccctgctgtggggcctctagtcagggagctgatcaggagcctg
tttatgtctgtgcttgggcaccaagacgaggaggggaggtgttacagcgactcactggct
gagatccctgcccaggacccggccagcccagagaagcctctgctcaactttgacgtgatc
cgggccaacgtggagcgaggacgctaccgcaggctggacgtgttccaggagcacatgttt
gaggtgctggagaaggccaggcgcctgcacaggacagactctgagatctttgaggatgcg
gtggagctgcagcagttctttataaagatcagagatgagctgtgtaagaacggtgagatc
ctcctctccccggctctcagctacacctctaaacacatgcacagtgacgtagagcaggag
aagagagagaaactacccaaggagatggaggaggacaaactgaagagggaggaggagaat
aaagaggagggagagaaggctgaggacccagctgggggaggtgcagggccagagaggatg
tacagtcaggactgcagctttgagaacagcacctaccacgtgggagactgtgtctacgtg
cagctggccgaggccaaccgcaagcctcacatcgtctgcatcgagcgcctgtgggaggac
gaagcaggcgagaagtggctgtatggctgttggttctacaggcccggtgagaccttccat
ctggcaacacgcaagttcctccagcaagaggtcttcaagagtgactacttcaacaaagta
ctagtcagcaagatactgggcaaatgcatggtcatgtttgtcaaggattacttcaagctg
cagcctgagggagtaagaccagaggacgtgtacgtctgtgagtcccgctattctgccagg
aacaaggcctttaaaaagatcaagctgtgggccgtgccagccgccgtgaggtttgtccct
cgggacgttcctttgcccgttgtccgggtggcctccatgtatgccaaacgtgatcaggag
aaactgctggccgtggctgataacggcagccgcagcatcgttgacaaggagcgtgaggat
gtgccagtggagatgactggaggggagccaggctgtccgtactatgaccagcttcactac
aacaacacgtggctgaaggtgggagactgtgtctacatccagtcacatgagctcattaaa
ccacgcatcggcaggatagagaagctgtgggtgcgtgacggagcagcgttcttcttcggg
cccatcttcatccacccagaggagactgaacacgagcccaccaggatgttttacaggaga
gaggtgtttctcagcaacctggaggagacatgtcccatgacctgcgtcatcggtaaatgt
gtggtgtcgtcctttaaggactacctgtcgtgtcggcccactgaggtgtctgaggaggac
gtgttgctgtgcgagagccgctacatcgagagtgagaaacaaatgaagaagtttaaaggc
ctgaagcgcttctccctccacgctaaggtggtggacgacgagatctactacttcaggaag
ttgatagtgccccagaaggagccgtctcctctgctgaataagaagattgaagagttggag
atgaagctggcagacatggatgagggggatgaggatctggatgacctggaggatgaggac
gaggctccagagactccctccatgcccatcatgcagacccctctggcaagcgatttggac
atcatgccttacacccctcctcagtccacacccaaggtaaagggtgtgtctaagaaggat
ggagccaagaggaagatgaacatgagcggctacatcctgttcagcagtgagatgcgttca
gtcatcaagacccgccaccctgatttctcctttggggagctcagccgtctggtgggaacc
gagtggaggaacctggaggctcccaagaaagtagagtatgaagagcgggcagccagggtg
gtggagcagcaggagagggagagggcagcccagcagcaagcttcccctagagcaggtacc
ccagtaggggccatgatgggaatgacgcctggtccaggcatgatgggagcttatggcccc
ccctacggtatgcccatgcagggcccctatgagggctttctgggtatgggcccaatccca
cctcaccatatgggctcgatacccccccaacacttccagccaggtatgcctgggtaccac
cctggcatgccccacccgggtatgatgggtcctggtatgaatggcatgcaaggaagtccc
ggaggccaccactacatgcaacagcctgggatgcaggcccctccaccatacccaggcatg
ggccagctaggccaaccctcccacctccagcccacgacccccatgtttgtggctccaccg
cccaagacccagagggtgctccactctgaggcctacctcaagtacattgagggcctgaac
gcagagaacaacactgtcagcaagtgggaccaatctctcaaagcacgtaggagagatgtt
cacctgtccaaagagcaggagagcagactcccttcccattggttgaagagcaagggagcc
cacacgacgatggcagatgcactgtggcgcctgcgggacctgatgcttcgagactcactg
aacatacgtcaggcgtacaacttgtag
DBGET
integrated database retrieval system
