Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139413818
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Entry
139413818 CDS
T10872
Name
(RefSeq) integrin alpha-5-like
KO
K06484
integrin alpha 5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03266
Virion - Herpesvirus
ocla04145
Phagosome
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04810
Regulation of actin cytoskeleton
ocla04820
Cytoskeleton in muscle cells
ocla05100
Bacterial invasion of epithelial cells
ocla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
139413818
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139413818
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
139413818
09144 Cellular community - eukaryotes
04510 Focal adhesion
139413818
09142 Cell motility
04820 Cytoskeleton in muscle cells
139413818
04810 Regulation of actin cytoskeleton
139413818
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
139413818
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
139413818
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139413818
04515 Cell adhesion molecules [BR:
ocla04515
]
139413818
04090 CD molecules [BR:
ocla04090
]
139413818
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
139413818
Cell adhesion molecules [BR:
ocla04515
]
Integrins
Integrin alpha subunits
139413818
CD molecules [BR:
ocla04090
]
Proteins
139413818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_2
Integrin_A_Ig_1
FG-GAP
FG-GAP_3
ITGAX-like_Ig_3
DUF11
Motif
Other DBs
NCBI-GeneID:
139413818
NCBI-ProteinID:
XP_071017704
LinkDB
All DBs
Position
7:complement(73433731..73494385)
Genome browser
AA seq
1062 aa
AA seq
DB search
MGTGRRLSAISVNSILRNPGYCALFVVIAVVFIQLCATFNLETENRIVYSGPKGSFFGYS
VDFFYNNASSFSILIGAPKANTSQTNIIEGGSVYLCPWSQDQSECSVVNFDNEGDRSFHV
NDVDVQVEFKSHQWFGATVRSHGNTVLACAPRYYWRTEHDAPFSDATGTCYLSVDNLKTF
VEYAPCRTERHGPAGQGYCQGGFSADFTKDGKVVLGGPGSFYWQGQLVSATTEEIVKAYF
PSYFLLSVTGQIQTRQVQGSYDDSYLGYSVAGGEFSGDDIEDFITGVPKGLMLHGLVSLL
NGTDLKSMLNLTGEQMGSYFGYAVAATDINNDGLDDLVVGAPMFMQRGSDGLRWEEVGRV
YVYLQQRPLLFEPSLPPLGGSQAFGRFGSSLAPLGDLNQDGFNDIAIGCPFGGDDQQGLV
LIYNGHASGLKDTPTQALAGQWASGTFPASFGYALRGEKDLDQNGYPDLIVGAFGADKAV
LYRARPIVNASASLTVQPTMINSEEKSCMVSNGNKTISVSCVNLSFCLSANGKHLPADLV
FMVEVQLDHLEQKQRESSVRRTLFLDSHQPSLLETITMANGGPTCHDTRIYLRSEGEFRD
KLSPIYITLNFSLDPLAQLDLHGLKPILNYQTTHIIKKKAQIQLDCGEDNICVPDLKLAV
YGDRTEVYLGDENSLTLTFNARNEGEGGAYEAELYVVLPAEADYSGIARNNASLTQLTCS
YEAENQTRSLVCDLGNPMKSGTSLWAGLRFTVPRLKDTHNTVQFELQIRSKNENKSQSDD
ELFHLEVAVVADVILQGVSRPDKLLFPPPNWRMSHSLQEEQDVGPEIQHVYELVNNGPSM
ISQSVLELRCPLKSQGHDLLYPLEVITQGPLDCSSNHTLNALKLKLQPPTTEQPPSPLTA
SPEHHVQRREVYRDPLDEQGNLSCSTAECWRLRCHVGLLERGNSVILTVRSRIWPEAFLE
RAYKQYVLECSVEYGVEKMPYSIAPKLKPSGSKKVLTPVMWNKPDSQYMVPLWIIILAIL
AGLLLLALVIYVLYKLGFFKRSNLYGTAMEKAQLKPQASSEA
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgggcactggacggcgactttcagcaatttcagtcaactcaatcctgcgaaatccaggt
tattgcgccttgttcgttgtaattgcagttgtttttatccagctgtgcgcaacgtttaac
ttagaaacagaaaaccggatcgtctactctggacctaaggggtcttttttcggttattcc
gtggatttcttctacaataatgcatctagtttcagtattctgattggtgctcccaaagct
aacaccagccaaacgaacatcatcgaaggtggatctgtgtacttgtgtccctggagccag
gaccaatcggaatgcagtgttgtcaattttgacaatgaaggggatcgcagtttccacgtc
aacgacgtcgacgtccaggtcgagttcaagtcccatcagtggtttggggctacggtgcgt
tcccatggcaacactgtcctggcttgtgccccaagatattactggagaacggaacacgat
gcccccttctcggatgccacaggaacctgctacctctccgtggacaacctcaagacattt
gtggagtacgccccctgtcgcacagagagacatggtcctgcaggacagggctactgtcag
ggtgggttcagtgctgacttcaccaaggatgggaaggttgttctcggaggaccaggaagc
ttttactggcaaggtcaactagtctctgccaccacagaggaaatcgtcaaggcctacttc
ccatcctacttcctgctctctgttactgggcagatccagactcggcaggtgcaggggagc
tatgacgacagctacctcggttactctgttgccggcggggagttcagtggagatgatatt
gaagacttcatcaccggagttcccaaaggactcatgctgcatggtttagtgtcattactc
aatgggacagatctgaaatccatgctgaacctaactggagaacagatgggttcctatttc
ggctacgcagtggcagccaccgacatcaacaacgatggtctggatgacctggtggtgggc
gctcccatgttcatgcagagggggtctgacggactgcgttgggaggaggtgggccgtgtc
tatgtgtacctacagcagcgtcccttgttgtttgagcccagcctgccccccttgggaggt
agtcaggccttcgggaggttcggaagctccctggccccgctgggagacctcaaccaggac
ggcttcaacgatattgcaattggctgtccctttggaggagacgaccaacagggattggtc
ctcatctataacgggcatgccagtgggctgaaggacacgcccactcaggctctagctggc
caatgggcctctggcacctttcctgccagttttggctatgccctccgcggagagaaagat
ctggaccagaatgggtacccagatctcatcgtaggtgcttttggggctgacaaggctgtt
ctgtacagggctcggcctattgtcaacgccagtgcttctcttactgtgcaacctaccatg
atcaactcagaggagaagagttgtatggtgtccaatgggaacaagactatctctgtgtct
tgtgtcaacctcagtttctgcctctcggccaatgggaagcacctccctgctgatctagtt
tttatggtggaggtgcagttggaccatctggagcagaaacagagagagtcatcagtgagg
agaactctgttcctagatagccatcagcccagcctgctggagaccatcaccatggccaac
ggaggaccaacgtgtcacgacacccgcatctacctgcgcagtgaaggggagtttcgggat
aaactgtcccccatttacatcaccctcaactttagcctggatcctctcgctcaactggac
ctccatggcctaaaacccattctaaactaccagacaacacatattataaagaagaaggcc
caaattcagctggactgtggggaggacaacatctgtgttcctgacctcaaactggccgtt
tatggcgataggacagaggtgtatcttggcgacgagaactccctgaccctgaccttcaat
gccaggaacgagggagagggcggggcctacgaggcagagctttacgtggtactgcccgcg
gaggctgactacagtggtatagcccgcaacaatgcgagtctgactcagctgacctgtagc
tacgaggcagagaatcagacccgctctctggtctgtgacctgggcaaccctatgaagtct
ggaacaagtttgtgggcaggcctccgcttcactgtgcctcgactgaaggacactcacaat
acagtacagtttgagctccagatacgcagtaaaaatgagaataaatcccagagtgatgat
gagctctttcatctggaggtggctgtggttgctgatgttatcctacagggcgtttctcgt
ccggacaagctcctcttccctcccccgaactggaggatgagccacagcctacaagaggag
caggatgttgggcctgagatccagcatgtgtacgagttggtgaacaacgggcccagtatg
atcagtcagtcagtgctggagctgcgctgccctctgaaatctcagggtcacgaccttttg
taccctctggaggtcatcactcagggaccactcgactgcagctccaaccacaccctcaat
gcactgaagctcaagctccagcctcctacaacagagcagccaccctctccactgacagcc
agccctgaacaccacgtccagaggagagaggtctacagggatcctctggatgaacaagga
aacctgtcatgttctaccgctgagtgctggaggctgcgctgtcatgtggggttactggag
agaggaaacagtgtcattctgaccgtccgctcacgcatctggcctgaggccttccttgag
agggcatacaagcagtatgtgctggagtgttctgtggagtacggagtcgagaagatgccc
tattccatcgctcccaaactaaaacccagtggatccaagaaggtcctgactccagtgatg
tggaacaagccagacagccagtacatggtaccactgtggatcatcattctggccatactg
gctggattgctgctgctcgcactggtcatatatgtactctacaagttgggcttcttcaaa
cgatcaaatctttatggtacagccatggagaaagctcaactcaaaccacaggcttcttct
gaggcctaa
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