Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139413984
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Entry
139413984 CDS
T10872
Name
(RefSeq) protocadherin-9-like
KO
K16498
protocadherin delta 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
139413984
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ocla01009
]
139413984
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139413984
Protein phosphatases and associated proteins [BR:
ocla01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
139413984
Cell adhesion molecules [BR:
ocla04515
]
Cadherins
Protocadherins
139413984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_4
7tm_3
MAP17
EphA2_TM
Big_9
DUF6377
V_ATPase_I
Motif
Other DBs
NCBI-GeneID:
139413984
NCBI-ProteinID:
XP_071017970
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All DBs
Position
7:complement(5169332..5177467)
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AA seq
1053 aa
AA seq
DB search
MDLTDFYLLAALVACFWMDPSIAQELIYPIREELQENVLIGNIPKDLNVSHTNAATGASA
NLVYRLVSKAGDNPLLRVQSSTGEIFTTSNRIDRERLCPGPSFEENECSFEIEVVILPND
YFRLIKIKIVVKDTNDNAPMFPSPVINISIPENTLINSRFAIPSATDPDTGPNSVHKYQL
VNGQSAFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGMPQKSSTAILQVT
VTDVNDNKPVFRENQIEVHIPENSPIGTSVVQLQATDADVGANAEIKYMFGTQVSPATKR
LFALNGTTGLITVQRPLDREETAIHKLSVLASDGSSSPARATVTINVTDVNDNPPNIDLR
YIISPINGTVFLSEKDPINTKIALITVSDKDTDVNGKVICFIEKDVPFHLKAVYDNQYLL
ETSALLDFEGTKEYNFKIIASDSGKPSLNQTALVRVRLEDENDNSPIFSHPVIELAVVEN
NKRNLFLTTLSATDEDSGKNAEIVYQLGPNASFFDLDRKTGVLTASRVFDREDQDRFLFT
VTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDSDA
GENAAVTLSILSDNENFILDPYSGVIKSNVSFDREQQSSYTFDARAVDSGRPPCSSAAKV
TINVIDVNDNTPIVIYPPSNTSFKLVPLSSIPGSVVAEVFAVDGDTGMNAELKYTIVSGN
TKGLFRIDPVTGNITLEEKPAISDIGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTVGNA
TFIYDLIRRTMETPLDRNIGESGETYQSGDYLTIMIAIVAGAMVVIVVIFVTVLVRCRHT
SRFKAAQRKKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEENKPDDPAHEPIN
GNISLPAELEEPGHFDWNAAPTTTFKPSSPDLARHYKSASPQSAFHLKADTPVSVKKHHM
IQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGSVHPSRQDLSGCLRMSQ
DVSGCPRMSQDVPGCLRMSQDVPGSPRMSQDVS
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggatctaacagacttttacttgttggctgctctcgttgcctgtttttggatggaccct
tctatagcccaggaactgatctatcctattagagaggaactgcaggaaaacgttctcatt
ggaaacataccgaaggacctgaacgtctcgcatacaaacgctgctaccggagctagcgct
aacctggtctacaggctggtgtctaaagccggcgacaaccctctgctcagagtgcagagc
agcacgggagagatatttacgacctccaatcgcatcgacagggagaggctctgtcccggc
ccctcgttcgaggagaacgaatgctccttcgagatcgaggtggtgattttacccaacgac
tacttcagattgataaagattaagatcgtagtcaaggacaccaacgacaacgctcccatg
ttcccgtctcccgtcatcaacatctccatcccggagaacacgctgatcaacagtcgtttc
gccatcccctccgccaccgaccccgacaccggccccaacagtgtacacaagtaccagctg
gtgaacgggcaaagcgccttcgggttggacatcgtagagacgcccgagggggagaagtgg
ccgcagctcatcgttcagcagaacctggacagggaacagaaggacacgtacgtcatgaag
atcaaggtggaggacggcggcatgccacagaaatccagcaccgccatcctccaagtcacc
gtcacagacgttaacgataacaagccggtgttcagggagaaccagatcgaggtccacata
ccggagaactcgccaatagggacgtccgtagtccagctacaggctacggacgcagacgtc
ggggcgaatgccgaaatcaaatacatgttcgggacgcaggtgtccccagctaccaagaga
ctatttgctttaaacggcaccactggccttataaccgtacagcgacccctcgatagagag
gagaccgccatacacaagttatccgtgttagcgagcgacggcagctccagcccagccaga
gctaccgtaactataaacgtgacggacgtgaacgacaatccgccaaacatcgatctgaga
tatatcatcagtccaataaacggcaccgtgttcctctcggagaaagacccaatcaacacc
aagatagctttgatcaccgtgtcggacaaggacacggacgtcaacggcaaggtcatctgt
ttcatcgagaaggatgtcccctttcacctcaaagcggtgtacgacaaccagtatctacta
gagacgtcggcgctgctcgactttgaggggaccaaagagtacaacttcaaaatcatagcc
tccgactctggcaagccgagcttgaaccagacagcgttggtaagggtgaggctggaggat
gaaaatgacaactcgccgatcttcagccatcctgtcatcgagctggccgtcgtggagaac
aacaaacgcaatctcttcctcacgactctcagcgccaccgacgaggacagcgggaaaaac
gcggagatcgtctaccaactgggccctaacgcctcgttctttgacctggaccgtaaaacc
ggtgtcctcacggcctcccgggttttcgatcgcgaggaccaggatcggttcctcttcacg
gtaacggcccgagacaacgggacgcctccactccagagccaggcggcagtcatcgtgaca
gtgctcgacgaaaacgacaacagccccaagttcacccacaaccacttccagttctttgtg
tcagagaacctgcccaagtacagcacggtgggtgtgataactgtcacagactcagacgcc
ggggaaaatgccgccgtcacgctttcgatactcagcgacaacgagaactttatcctagac
ccgtactctggagtaattaagtccaacgtgtcctttgaccgggagcagcagagctcctac
accttcgacgcccgggcggtggatagcgggcggcccccatgttcctcggccgccaaggtg
accatcaatgtcatcgacgtaaacgacaacacccccatcgtcatctaccctccttccaac
acctccttcaaactggtccccctctcgtccatccctggatcggtggtggccgaggtcttt
gctgtggacggtgacacagggatgaacgcagagctcaagtacaccatcgttagcggcaac
accaaaggtctgttccggatcgaccctgtgacaggaaacatcaccctggaggagaagcct
gctatctccgacatcggccttcatcggctggtcgtgaacattagcgacctgggctaccct
aagtccctgcacaccctggtgctggtgttcctctacgtgaacgacacggtcggcaacgcc
acgtttatctacgacctcattcgccgcaccatggagacgcccctggacaggaacatcggg
gagagcggtgagacttaccagagcggagattatctcaccatcatgatcgccatcgtagcc
ggggcgatggtggtgattgtggtgatcttcgtgacagtcctggtgcgctgccgtcacacc
tcgcggttcaaggcggcccagagaaagaagcagggcgctgagtggatgtctcccaaccag
gagaacaagcagaacaagaagaagaagcgtaagaaaaggaagtcgcctaaaagctccctc
ctgaactttgtcaccatcgaggagaacaagccggacgacccggctcacgagcccatcaac
ggcaacatcagcctgcctgccgagctggaggagcctggccactttgactggaacgctgct
cctacgaccaccttcaagccttccagtccagacctggcacggcactacaagtccgcttct
ccgcagtccgcgttccacctcaaagcggacacgccggtctccgtgaagaaacaccacatg
attcaggagctccctctggacaacaccttcgtagggggctgtgatactctctccaagaga
tcctccactagttcagaccacttcagtgcctcggagtgcagttcccagggaggattcaag
actaagggatccgtacacccgtccagacaggatctctcaggatgtctcaggatgtctcag
gatgtctcaggatgtcccaggatgtctcaggatgtcccaggatgtctcaggatgtctcag
gatgtcccaggatctcccaggatgtctcaggatgtctcatga
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