Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139413991
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Entry
139413991 CDS
T10872
Name
(RefSeq) collagen alpha-2(V) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139413991
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139413991
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139413991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
FnI_RECK
Motif
Other DBs
NCBI-GeneID:
139413991
NCBI-ProteinID:
XP_071017977
LinkDB
All DBs
Position
7:complement(7393691..7423807)
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AA seq
1475 aa
AA seq
DB search
MEWLDEKKDETCRDNGQVYAHNDMWTPEPCRVCVCDSGTTICEEVQCEMVGNCEKVTIPE
GECCPVCDSFSSANRRIEMMAFKGQKGEPGDIPYVVGPVGQPGPMGPPGAQGNRGYTGFK
GRKGLQGPAGIDGEPGVPGNPGEPGSPGQPSHPGGQLVSQMAAGFGEKSAGMMGMISGNR
GEAGPRGPPGQSGQPGSTGGQGAPGDVGDPGSMGGFGHRGPEGPPGKPGPDGESGPTGID
GDKGAAGSAGARGFPGLPGHPGLKGLKGHAGLLGARGQSGAAGSKGPSGTPGGMGPPGPA
GPAGMQGERGRSGPTGPVGKRGESGHIGKAGPQGPMGITGALGFPGSPGIKGQPGPPGAR
GTGGQQGPRGEAGRVGLAGATGIQGPTGTEGAAGTKGPSGAPGVQGLTGLLGPAGPPGPQ
GTTGLPGPKGQLGDLGIPGFKGEAGFKGESGAPGDHGALGPMGEEGRRGGRGDAGTSGAA
GPNGERGAPGSRGFPGQDGLPGQKGAQGERGLGGSSGAKGADGDPGRTGEPGLPGARGLS
GLLGSQGPEGHQGPMGGGGEDGGPGPAGSDGTRGLAGTMGVVGPKGFTGDPGKAGEVGTP
GVAGQRGVNGKAGEMGAGGTAGPAGVAGKRGEQGPPGMNGFQGLPGSAGPPGESGKPGAE
GIAGEGGTAGLTGPRGERGIPGERGDVGTNGLPGPKGISGGPGPEGPKGGSGTKGTVGDI
GAAGLQGMPGERGIPGSPGPKGDVGSVGEKGTEGTAGNDGPGGLPGPVGPTGGIGLSGDK
GEAGPKGPPGRRGARAVAGASGEPGPTGAVGFPGSPGPDGQPGVKGEPGERGQKGEAGAQ
GLQGTAGKLGSQGPDGVTGLKGARGTQGAAGGSGFPGFPGGVGPAGSVGEVGVPGDIGTP
GKAGTPGLRGENGGPGRVGERGAPGPAGAPGDKGEPGEDGPGGPDGPAGPPGISGQRGVV
GIPGVRGESGMVGPPGTAGAPGKSGAPGTRGGKGAVGAVGLPGTTGPRGDLGLTGNAGSD
GVPGKDGLIGARGDRGNPGAEGLAGTPGLHGSVGPVGTSGVPGKRGDNGARGPPGPQGQS
GIRGKLGPQGPQGDRGAKGDQGERGQKGHRGFTGLQGLPGTTGQSGDVGARGIVGPTGHR
GPPGVVGPAGGDGQIGLTGPMGSPGSRGTSGDIGPQGPPGDAGPPGPPGTPGPPTAGANM
FGFSSSFDYDYGEDQDGPPPPPEFNGDESAPPQPPPESNWIDSGPHPPPEFNDDEARPNN
ASTVLGADQSVQTTLKSLSGNLQNMKCPDGSQANPAKTCQDIKQCHPLKKTGDYWLDPNQ
GSTKDVIKVFCNMETGETCISAHPISASIPRKTWWTKSTPTASKPVWFGANMNGGTKFSY
GNKEELPNAVTIQIRLIRLLSKEGVQNVTYHCKNSVAVNDGATGNLKKALILKGSNGQEV
KVQGNSRLRYTVLEDGCSCKLEIFGSNSCVFVRCG
NT seq
4428 nt
NT seq
+upstream
nt +downstream
nt
atggaatggctagacgagaagaaggatgagacctgcagggacaacgggcaggtgtacgcc
cacaacgacatgtggaccccagagccgtgcagggtgtgtgtgtgtgacagtggaaccacc
atctgtgaggaggtgcagtgtgagatggtggggaactgtgagaaggtgaccatccctgag
ggagagtgctgccccgtgtgtgacagcttctccagcgctaacaggaggatagaaatgatg
gcgttcaagggtcagaaaggcgaacctggtgatatcccttacgtcgtggggccagtaggt
caacccggaccaatgggtcctcccggggctcaggggaacagaggatacactggtttcaag
ggcagaaaaggtttgcagggcccagctggcatcgacggggaaccaggagttccagggaac
cctggtgagccaggatcccccggccagccctcacaccctgggggtcagctggtctctcaa
atggcagcaggcttcggtgagaaatcagctgggatgatgggaatgatatctggcaacagg
ggtgaggcaggaccaagagggcctcctggacagtccggtcaaccaggctctacagggggg
cagggggccccaggagacgttggagaccccggatccatgggtggctttggtcacagagga
cctgagggcccaccaggaaaaccaggaccagatggagaatctggcccaaccggaatagat
ggagataaaggagccgctggatctgccggtgccagaggtttcccaggactgccaggtcac
cctggactgaaaggccttaagggtcatgcaggtcttctaggagcgagaggtcaatctggt
gctgctgggtcaaagggcccatcaggtactccaggtggaatggggccccctggtcctgcg
ggtccagcaggaatgcaaggggagagaggaaggagtgggccaactggacctgtggggaaa
cgtggtgaatctggacatattgggaaagcaggaccacagggtcctatggggatcactgga
gctctaggattcccaggtagtccaggtataaaggggcaaccagggcccccaggagcacga
gggacagggggccagcaaggaccaagaggggaggccggacgcgtgggattggctggagct
acgggaattcagggtccaacaggaacagagggtgctgctggaaccaaaggaccatccgga
gctccaggtgtccagggtctgactggactgcttggccccgcggggccccccggaccacag
ggaaccactggactgcccgggcctaagggccaactgggtgatttaggcattcccggattc
aaaggagaggctggattcaaaggagaatctggtgcacctggtgatcatggagcgctgggt
cccatgggagaggaggggaggaggggaggacggggtgacgctgggacttcaggagccgct
ggacccaatggagagagaggtgctcctggcagtagaggttttcctggtcaggatgggtta
cctggtcaaaagggtgcccaaggtgagcgaggactgggtggatcatctggtgccaaaggt
gccgatggtgaccctggacgcactggagagccaggtcttccaggggcacggggtctgtca
ggtcttctcggctcccagggtcctgagggacaccaaggaccaatgggaggaggaggagag
gatgggggaccaggtccagcagggtcagatggtaccagaggtctagctggaaccatgggt
gtagttggaccaaaaggctttactggagaccctggtaaggcaggagaagtggggacccca
ggtgttgcaggacagaggggggttaatgggaaagctggagagatgggcgctggtggcact
gctggtccagcaggagttgcagggaagagaggagagcaaggacctcctggtatgaatggc
ttccagggtctacctgggtctgctggtccacctggagagtctgggaaaccaggtgctgag
ggtatcgctggagagggagggactgctggtctcacagggccaaggggtgagcggggcatc
ccaggagagagaggtgatgtgggaactaacggactaccggggcccaaaggtatttcagga
gggccaggaccagagggaccaaagggggggtctggaactaaaggaaccgttggggacata
ggagctgcaggcctgcaggggatgccaggggagaggggtatccctggttctcctggtcct
aaaggagatgtgggttcagttggtgagaaaggaaccgagggtactgctggaaacgacggg
cccgggggacttcctggtccagttggaccaacaggaggcattgggctcagtggtgataag
ggagaggccggccctaaagggccccctggacgtcgaggagcgagagcagtggccggagct
tctggggagcctggtccaaccggtgcagtaggattccctgggtctcctggtcccgatggg
caacccggggtcaaaggtgaaccaggagagaggggtcagaagggtgaggctggagcacag
ggactccagggaacagctggtaaacttggttcccagggtcctgatggtgtgactggacta
aagggggccagaggaacacaaggggccgcgggtgggtctggtttcccaggattccccggg
ggagttggtccagcaggctccgttggtgaggtaggggtgcctggagacattggtacccca
gggaaggcaggtactccgggacttagaggcgagaatggaggccctgggcgtgtaggagag
agaggggccccgggcccagcaggtgccccaggagacaagggagagcctggagaggatgga
ccagggggccctgatgggccggcgggaccaccaggtatctcaggacagcgaggtgttgtg
ggcatacctggagtcagaggagagagcgggatggttgggccccccggtactgctggtgca
cccggaaaatcaggtgcccccggaactcggggaggcaagggtgctgtcggtgcagtcggg
ttaccagggacaaccggaccaagaggggaccttggtcttacggggaatgctgggtctgat
ggggtacctggcaaggatggacttataggagccaggggagatagagggaatcctggtgct
gagggtcttgctggaactccggggcttcatggctctgttggtccagtcggcacctctgga
gtccctgggaagagaggagacaatggtgctagagggcctccaggaccccagggacaatca
gggatccgggggaagctggggcctcaagggccacagggagacaggggagccaaaggagac
caaggagagagagggcagaaaggccacagaggcttcactggattgcaaggcttacctggg
acaactggacaatctggggatgttggagctcgaggaattgtaggacctactggacacaga
gggccccctggtgtggttggccccgcaggaggtgatggacaaatcgggctgaccgggccc
atgggatctcctggatcaagaggaaccagtggagacatcggacctcaggggcctcctggg
gatgctggtccccctggtcccccagggacccctggccctcccactgctggggctaatatg
tttggcttcagcagctccttcgactacgactacggcgaggaccaggatggaccacctcca
cccccagagtttaacggggatgaatcagccccccctcaaccccctccagagtccaactgg
atcgactctggcccccatccccctccagagttcaacgacgatgaggcgcgtcccaataat
gcctcgaccgtcctcggggcagaccagagcgtccagaccacgctgaagagcctcagtgga
aacctgcagaacatgaagtgtcccgatggcagccaggccaaccccgccaaaacctgccag
gacatcaagcagtgccacccccttaaaaagaccggagactactggctggaccccaaccag
ggcagtaccaaggatgttatcaaggtgttctgcaacatggagactggtgagacctgcatc
tcagcccaccccatctcagccagcatccctcgcaaaacatggtggaccaaatccactccc
actgccagcaaacctgtctggtttggagcaaatatgaatggaggaactaaatttagctac
ggcaacaaggaggagctgcccaacgccgtaaccattcagattaggctgatccgcctgctt
tctaaggagggtgtccagaatgtcacctaccactgcaagaacagcgtggccgtgaatgat
ggagccacaggcaacctgaagaaggctctgatcctcaagggctccaacggacaggaggtc
aaggttcagggcaactcccgcctcagatacactgtcctggaggatggctgctcctgcaaa
ttggagatttttggttccaacagctgtgtctttgtgagatgtgggtga
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