Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139414120
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Entry
139414120 CDS
T10872
Name
(RefSeq) probable ribonuclease ZC3H12C
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139414120
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
139414120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
zf-CCCH_2
zf-CCCH_4
UBA_N4BP1_C
23S_rRNA_IVP
UBA_N4BP1
Motif
Other DBs
NCBI-GeneID:
139414120
NCBI-ProteinID:
XP_071018101
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All DBs
Position
7:16690192..16696442
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AA seq
911 aa
AA seq
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MGLKDHPEEDGAGRILDLGLVLEYLHIEGSVSRQAGADTGPSMEPGEEEEEACEGSGSCS
LSTPGGKEGEVVGEESAGFDSDPEPARKSTGSNPAGGVSVSELDGVPVPNTHQPLCRTPC
VDLGSEGPPDPPSGEPSSGEALREHQSKLEFALKLGYAEELVRLVLAKLGPYTLINDILG
ELVKLGRKVETNQQLTGSTASQPTPSTCSSSSTCGYVEAQQGRTDSPYQTDLLLGDKDNL
RPVVLDGSNVAMSHGNKEVFSCYGIQLAVDWFLERGHRDITVFVPSWKKEQSRPDALITD
QDILRRLEKDKILVFTPSRRVQGRRVVCYDDRFIVKLAYESDGIIVSNDNYRDLACEKPE
WKKLIDERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRPIMPEHKKQPCPYGKKCTYG
HKCKYYHPERSAQCQRSVADELRASAKTSATSTSAKGQAGEAGLVKSHSVPNNVAMGTKR
GSAPKRQCDPSIRALSYGEAEDKLRHAEKCNSLSSSSGSSCCSGSVTLSPAPGGPPSALS
DPQEQPPSLGRDTPYMTLLHPHPHPDPYSSSCDPPDLSYYSVTPAHSGLAARRSPESRFP
LDTDLRLLGSSDCVSSGCDSYGEKASCLCCPGPLLDKYIHHQHHQHNRLYSQHSAPLLEP
HHPSPHTSVLYGYHQSLARGHSFPHDEPPDPHLKRPLYPLPPPLQHQAIGARSSCPGDYP
SVSQSGPYPAGSPLGRCLANTRLETLSDSRLYERSALPPRKAFSWDPYCSQPPQSCYETY
QSLPENHDVGWGHTSPWGQTTHSYHPSHQPYSSQPPHPPYPPHPSHPPYPPQPPHPSHAP
QPSHPSMPLHHMHQEPPALSRYGEVRGKVYLNLCNIFPSELVGRVMGRNPHVTDAQQLAA
AILAEKSQSDY
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgaaggaccatccggaggaggatggagcaggccgcatccttgacctggggctg
gttttagagtacctccacatcgaaggctccgtcagcaggcaggctggcgccgatacaggg
cccagtatggagccgggcgaggaggaggaagaggcctgcgagggcagcggcagttgcagc
ttgtccacgcctggggggaaggagggggaggtggtgggggaggagagcgctgggttcgac
agtgacccggagccagcccgaaagagcaccggttctaacccggctggaggagtgtccgta
tctgagctagatggtgtgcctgttcccaacacccaccaacctctatgcaggactccctgt
gtggacctggggtccgaggggcctcctgaccctccgtcaggggagccttcatccggggaa
gccctgagggagcaccagtccaagctggagtttgctctgaagctgggctacgcagaggag
ctggtgcggctggtgctggccaagctggggccgtacacgctcatcaacgacatactggga
gagctggtcaaactgggccgtaaggtcgagacaaaccaacagctgactgggtccacggct
tcacagcccaccccctccacctgctcctcctcttctacctgtgggtatgtggaggcgcag
caggggaggacagactccccctatcagacagacctcctcctgggggacaaggacaacctg
cggcccgtcgtcctggacggtagcaacgtggcaatgagccatggcaataaggaggtgttc
tcctgctacggcatccagctggctgttgattggttcctggagcgaggtcaccgtgacatc
actgtgtttgtgccttcctggaagaaagagcagtcccgccctgatgccctcatcacagac
caggatattttacgtcgtctggagaaggacaagatcttggtgttcactccgtctcgtcgg
gtccagggtcgccgggtggtctgctatgacgaccgtttcattgtcaagctggcctacgag
tccgacggcatcatcgtctccaacgacaactaccgcgacctggcctgtgagaagccagag
tggaagaagttaattgacgagcggctgctcatgtactcgtttgtcaacgacaagttcatg
cctcctgatgaccctctaggtcgtcatggtcccagtctggagaacttcctgaggaaacgt
cccatcatgccagagcacaagaagcagccctgtccttacggcaagaagtgcacttacggc
cacaagtgtaagtactaccacccggagaggagtgcccagtgccagcgctcggtggcagac
gagctgcgtgccagcgccaagacctctgccacctctactagcgccaagggccaggctggc
gaggccgggctggtgaagagccacagcgtgcctaacaatgtagcgatgggcaccaagaga
ggttctgcccccaaaaggcagtgtgaccccagcatccgggctctgtcctacggcgaggca
gaggacaagctgagacacgctgagaaatgcaacagcctcagtagtagtagtgggagtagt
tgttgtagtgggagtgttactctgtcccctgcccctggaggacccccctctgccctcagc
gacccccaggaacagccaccgagcctgggcagggacacaccctacatgaccctgctgcac
ccccacccccaccctgacccctactcttccagctgtgaccctccagatctgagctactac
tcagtgacgccggcccactctggcctggcagcacggaggagtccggagtcccgcttcccg
ctggacaccgatctgcgtctgctgggctcgtcagactgtgtcagcagcggatgtgactcg
tacggagagaaagcctcctgtctgtgctgcccaggccctctgctggacaaatacatccac
catcagcaccatcaacacaaccgcctgtactctcaacactctgcccccctgctcgagcca
caccacccctccccccatacctctgtcctctatggctatcaccagagcctggcacggggc
cacagcttcccccatgacgagccccctgacccccacctgaagcgccctctgtaccccctc
ccccctcccctccagcaccaggccataggcgcccgctccagctgccctggagactacccc
tctgtgtcccagtctggcccttaccctgctggctcccctctgggccgctgcctagccaac
acgcggctggagacgctgtcagactcccggctgtacgaacgctccgcgctgccccccagg
aaagccttctcctgggatccctactgcagccaaccccctcagtcctgctatgagacctac
cagagtctaccagagaaccacgatgtaggctggggacacacatctccatggggacagacc
acacactcttaccacccctctcaccaaccctactcctctcagccccctcacccaccctac
ccccctcacccctctcacccaccctacccccctcagccccctcacccatcccatgcccct
cagccatcccacccatccatgcccctccaccacatgcaccaggagccccccgccttgagc
cggtacggggaggtgcggggtaaggtctacctcaacttgtgtaacatcttcccctctgag
ctggtgggccgggttatggggaggaacccccatgtgacggacgcccagcagctagctgcc
gccatcttggctgagaagtcccagtctgactactga
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