Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139414143
Help
Entry
139414143 CDS
T10872
Name
(RefSeq) SLIT and NTRK-like protein 1
KO
K25832
SLIT and NTRK-like protein 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04514
Cell adhesion molecule (CAM) interaction
ocla04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
139414143
04517 IgSF CAM signaling
139414143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
LRR_14
LRR_LRWD1
LRRNT
Motif
Other DBs
NCBI-GeneID:
139414143
NCBI-ProteinID:
XP_071018125
LinkDB
All DBs
Position
7:19047177..19051865
Genome browser
AA seq
699 aa
AA seq
DB search
MLLWIVLLKAALCVAIGNVTRDICKEQICSCNEIEGDLHIDCEKRSFTNLHHLTGPSSQF
YHLLLHGNSLSRLFPNEFANFYNAVSLHLENNGLHDIVPGAFLGLQLVKRLHINNNKIRS
FRKSTFLGLDDLEYLQADFNLLRDIDPAVFRDLNKLEVLILNDNLISALPINVFQHVPIT
HLDLRGNRIKTVPYEGVLEQIPGIAEVLLEDNPWDCNCDLVSLKEWLENIPQNALIGRVI
CEAPTPLQGNDLNETSEMDLCPSMKSGADESLVAPPTQEETSVPGPVPTPYKASGDPGSP
TPGNGQKGRSKSHWQLKTKPTSMTGVNGEREQLQIVQNASCPVPCSCKLIGSRQGLGVNC
EGKKIESLANLKPKPITAHELNMRDNNVHAIKKNHLNGYSSLNLLDLGGNNIKLIDNSTF
QNLTELRWLYMDKNYLDTLIAEMFTGLQNLEYLSLEYNDIQLILAGTFSPLPNLRVLFLN
NNLLKALPVDAFLGVSLSKISLHNNYFTYLPVAGVLDQLNSIIQIDLHGNPWDCSCNIVP
FKQWTEKLGADVIVSDLKCESPEEFWKRDFRHVRNDLMCPKLYDKVYPTSLSKNSTFTAD
TGTRSNSYVEPNRVSISVLVPGLLLVFVTSAFTVVGMLVFILRNRKRSKRRDGNSSASEI
NSLQTVCDSSYWHSGPYHADGGAQRGFDCSAHFSTTNDA
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgctgctttggattgtcttgctgaaggcggctctttgtgtggccattggaaatgttaca
agggacatttgtaaggagcagatatgctcctgcaatgagattgaaggcgatttgcacatt
gactgcgaaaaaaggagctttactaatctgcaccatttgactggtcccagttcccagttt
tatcacttgctattgcatgggaattctttatccaggctttttcccaatgagtttgctaac
ttttacaatgccgtaagcttgcatttggaaaacaacggtttgcatgacattgtccctggt
gcttttctgggactgcaactcgtgaaaaggctacacataaataataacaagatacggtca
tttaggaaaagcacctttcttggtttagatgacttggaatatcttcaggctgattttaat
ctattgagagacattgacccggccgtgttcagggacttaaataaacttgaagtgttaatt
ctaaatgataacctcatcagtgcactacctataaatgtgtttcaacacgtccccatcacc
cacctcgacctgcgagggaaccgaatcaaaacggtgccttatgagggagttctcgaacaa
ataccgggcattgcggaggttttattggaggataacccctgggactgcaactgcgacctg
gtttccctgaaggaatggctggagaatataccgcagaacgcgcttatcggccgggtgatc
tgcgaggctccaacgccactgcaagggaacgacttgaacgagacatcggagatggatctg
tgtccttcaatgaaaagtggtgctgacgagagtttggttgcacctcctacccaagaggag
acctctgtacctgggcccgttccaacgccttataaagctagtggtgatccggggtcccca
accccagggaatgggcaaaagggacgctctaaatcgcactggcagttgaaaacgaagccc
acatctatgacaggtgtgaatggagagagagagcagctgcagattgtgcagaacgcatca
tgtcctgtgccatgcagctgcaagctcattggatccaggcaggggttaggggttaactgc
gagggcaagaagatagagagcttggctaacctaaaacccaaacccatcactgcgcacgaa
ttaaacatgagagataacaacgtccatgctataaaaaagaaccatctcaatggctattca
agtctgaatctccttgatttgggtggaaacaacatcaaattgatagacaacagtactttt
caaaatctcaccgaattaagatggttgtacatggataagaattacctggatacgctcatt
gcggaaatgttcactggacttcaaaatctggaatatctcagtttggaatataatgacata
cagttgatactggcaggcacattcagccctctgcctaatctgcgagtgcttttcctcaac
aataacttgctgaaagcgctacctgtggatgctttccttggagtgtctttatcaaagatt
agcttgcataataattatttcacatatctccctgtcgcaggggtcttagatcaactcaat
tcgatcatacaaattgatttgcatgggaacccttgggattgctcgtgtaatattgtccct
ttcaaacagtggacggagaaactgggggcagatgtgatcgttagtgatctcaagtgtgag
tccccagaagagttctggaaaagggatttccgtcacgtccgaaatgatctgatgtgtccc
aagttgtatgataaagtctaccccacctctctctccaaaaacagcacattcaccgcagac
acgggtacgcgctcgaactcctatgtggagccgaacagggtatccatctctgtactagtc
cctgggctactactggtatttgtcacgtctgcgttcactgttgtagggatgcttgtcttc
attttgcggaatcgcaagagatcaaagcggagggatggtaattcctctgcgtcagagatc
aattccttgcagacagtgtgcgactcgtcttattggcatagcgggccttaccatgcggac
gggggcgcgcaaagagggtttgactgtagcgcccatttctccacaacaaatgatgcgtaa
DBGET
integrated database retrieval system
