Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139414660
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Entry
139414660 CDS
T10872
Name
(RefSeq) smx5
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
ocla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139414660
09123 Folding, sorting and degradation
03018 RNA degradation
139414660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139414660
03041 Spliceosome [BR:
ocla03041
]
139414660
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139414660
mRNA degradation factors
5'-3' decay
Lsm complex
139414660
Spliceosome [BR:
ocla03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
139414660
Complex C
U2 snRNP components
139414660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
139414660
NCBI-ProteinID:
XP_071018529
LinkDB
All DBs
Position
1:complement(3702160..3709093)
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AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgcttttctactcctttttcaagtccctggtggggaaggacgtggtggtggagctcaaa
aatgacttgagcatctgtggaacacttcactcggttgatcagtacctgaacattaaactg
acggacatcagtgtcacggatccagagaagtatccacatatgttatcagtgaagaactgt
ttcatccgaggctctgtggtgcggtacgtccaactgcctgccgatgaggttgacactcag
ctgttacaggacgctgctcgcaaggaagcactgcagcagaagcaatga
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