Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139414872
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Entry
139414872 CDS
T10872
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139414872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139414872
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
139414872
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
139414872
NCBI-ProteinID:
XP_071018564
LinkDB
All DBs
Position
8:3765848..3901068
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AA seq
709 aa
AA seq
DB search
MSRHRNVRGYNYDEDLDDDDLYGQSVDDDYCISPATAAQFIYSSRQERPNVEPPLEEEEM
EEDEAIHTSPTLTHNLNPLDQGKLYSCLDLMRAVLGDAVPESVLTQAALRCAFDPQKALD
AVLSDESAGLPPLDARTNNDAPLPQRANKETAVVPRANQEASAAPRPEKAKDREAGQCQL
DSEVLPKVARMTVSGKKQTMGFDVPSTEENGVVPSPSVHRGGSPDDMTMKTSPETPSKRP
ETPSKGFGGAEEPPSVPTPGRTPGKAKQQLNVRAELEKRQGGKSLLNLVVIGHVDAGKST
LMGHLLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERNRGVTMDVGMTKFET
ASKVVTLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHGLLVRS
LGVTQLAVAVNKMDQVNWQQERFKEIISKLGHFLKQAGFKDSDVFYVPTSGLSGENLTTK
SSALALTSWYSGPCLLEQIDYFRPPQRSIEKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQ
TGDRVLAMPPNETCTVKGISLHDDPLDWAAAGDHVSLTVTGMDIIKINVGCVFCDIKEPI
RACSRFRARVLLFNIEVPITQGFPVVLHYQTISEPATIRKLVSVLHKSSGEVLKKKPKCL
GKGMNAMVEIQTQRPVALELYKDFKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcacagaaatgtccgaggctacaactatgatgaagaccttgacgatgacgat
ctttatggacagtctgttgacgatgattactgcatctcccctgctacagcagcccagttc
atctactccagcaggcaggagagacccaacgttgagccacccctagaggaggaggagatg
gaggaagatgaggccatacacacctctcccaccctcacacacaacctcaaccccctggac
caaggcaagttgtactcatgtctggacctgatgcgtgcagtgctgggtgatgccgtgcca
gagtcggtccttacccaggctgccttgcggtgcgccttcgaccctcagaaagccttggac
gccgttctctcagacgagagcgccgggctgccgcccctggacgccaggaccaataatgac
gcaccgctgccgcagagagcaaataaggagacagcagttgtaccaagagccaatcaggaa
gcctcagctgcaccgcgaccagagaaagctaaggaccgtgaggcggggcagtgtcaactg
gactcagaagttctgcctaaagtggcccgcatgaccgtctcagggaagaaacagaccatg
ggctttgacgtgccgagtacagaggagaacggggttgtccccagcccctccgtccatcgt
gggggtagccctgatgacatgaccatgaaaaccagccctgaaaccccctccaagcgtcca
gagacaccctctaaagggttcgggggggcagaggagcccccttccgtccccaccccagga
cgtaccccggggaaggccaagcaacagctgaacgtcagggccgagctggagaagagacaa
gggggcaagtctctactcaacctggtggttataggtcatgtggatgctgggaagagcact
ctgatgggtcacctgctgtacctgttgggaaacgtcaataaacgcaccatgcacaagtac
gaacaggagtccaaaaaggctggcaaggcctcgttcgcctacgcatgggtcctggatgag
accggggaggagaggaacaggggtgtaaccatggacgtggggatgactaagtttgagacg
gcctctaaggtggtgactctgatggacgctcctggacacaaagacttcatcccaaacatg
atcactggagcagcccaggcggacgtggcggtgttagtggtagatgccagcagaggtgag
tttgaggcagggttcgaggcaggtggtcagacgcgagagcacggccttctggtccgttcg
ttgggagtcacgcagctcgctgttgccgtcaacaagatggaccaggtaaactggcaacag
gagcgattcaaagagatcatctccaaacttggacatttcctgaaacaggctggatttaag
gactctgatgtgttctacgtgccgaccagtggtctatcaggagagaacctgaccactaag
agttctgctctggcgctaacatcctggtactctggaccctgtctgctggaacagatcgat
tatttcagaccaccccagaggtcgatagaaaagcccttccgactgtgtgtctcggacgtc
ttcaaagatcagggctcagggttctgtgtaacagggaagatcgaggcgggctacattcag
acaggagaccgagtactggccatgccccccaatgagacatgcactgttaaaggtatctct
ctccacgatgatcctctggactgggcagcagcaggagatcatgttagtctgaccgtcact
ggcatggacatcatcaagattaatgtgggctgtgtgttctgtgatattaaggagccaatc
agagcgtgttcccgcttcagggccagagtcctgctcttcaacatagaggtccccatcaca
cagggcttccccgttgtgttgcactaccagacgatcagtgaaccggccaccattaggaag
ctggtcagcgttctgcacaagagcagcggagaggtgctcaagaagaaacccaagtgtctg
ggtaagggtatgaacgcgatggtggagatccagacccagaggcccgtggcgttggagctc
tataaggacttcaaggagctgggacgcttcatgctgagatacgtagggtcaaccatcgct
gccggggtcgtcaccgagatcaaagaatga
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