Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139414899
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Entry
139414899 CDS
T10872
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04140
Autophagy - animal
ocla04148
Efferocytosis
ocla05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
139414899
04148 Efferocytosis
139414899
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
139414899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139414899
Membrane trafficking [BR:
ocla04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
139414899
Hops complex
139414899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_11
zf-RING_16
DUF5600
zf-C3HC4_2
zf_RING_Vps8
DUF1664
zf-ANAPC11
zf-RING_UBOX
DUF4446
zf-rbx1
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
139414899
NCBI-ProteinID:
XP_071018606
LinkDB
All DBs
Position
8:complement(7818418..7840955)
Genome browser
AA seq
986 aa
AA seq
DB search
MSSILDEYEDSLNSRHPVQHSSRLSAANIGMTHSGFVNVRLEEEKPIFNKQRIDFSPPEK
INHFAVCNNQLCMSLGKDTLLRIDLAKPDRPNQVELGRKEDSRVHKLFLDPTGSHLVISL
STSECLYLNRNTQKVRSLSRWRGHLIESVGWNKLLRTETNTGPILVGTSQGIIFEAEISA
SEGSLFNTNPDQYFKQVHSLEEDGRPAPVCCIEVERGPESKVVIIATTRKRLFQFVGRVA
EGSEQQGFSAIFSQNQELLPSFQEFPFNMGYSEITFYTPKLRSCPKAFAWMMGNGVLYGQ
LDYVKLDSLLSDVQVWDYTPDIDFSFNKPISIVLTQFHFLLLLPDRVKAICTLNGQVVYE
DVFPDKFGTLKKMIKDPAGGLVWIYTEKAVFRYHIQREARDVWQMYMSMNKFDLAKEYCR
DRPECMDIVLAKEAEHCFQDKRYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLLKK
LNNLKQSEKTQITLLVTWLTELYLNRLGLLQSDEGKHGVFQETRDEFRKFLSSSKHKECL
YNNRTTIYDLLASHGNVDDMVYFSVIMQDYERVISHHCQHDDYSAALEVLSKHCDEKLFY
KFSPILMQHIPKKVVDAWIQMGSRLEPKKLIPALVNYSQMGSTQQVNETIRYMEFCVYQL
TVTEEAIHNYLLSLYAKYKPDSLLWYLEQAGSHLSDIHYDLKYALRLCAEHGYLQACVLV
YKIMELYEEAVDLALQVDVDLAKTCADLPEDDEELRKKLWLKIACHVVQEEKDVKKAMNC
LSSCNLLKIEDILPFFPDFVTIDHFKEAICSSLQEYNQHIDELKQEMEEATESAKRIRED
IQEMRNKYGVVENQEKCAACDFPLLNRPFYLFLCGHMFHYDCLFLEVTPHLSTYKQTKLG
ELQKRLAAATQTSKSRHRPAPKEKEEGGDTASLGKGSAGVSREQIKSDIDDIIACECVYC
GELMIKSIDKPFIDPQKFEEEKSSWL
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctattctggatgaatacgaggactcgctgaacagcaggcaccctgtgcaacac
agtagccgcctgtctgctgccaacatcggcatgacacactccgggttcgtgaatgtgaga
ctggaggaggagaagccgatattcaacaaacagaggattgatttctcacccccagagaag
atcaaccactttgctgtgtgcaacaatcagctatgcatgagtttagggaaggacactctg
ctgaggattgaccttgctaagccagaccggcccaaccaggtagaactggggaggaaggag
gacagcagagtacacaagctcttcctggaccccacagggtcccacctggtgatttctctc
agtaccagcgagtgtctgtatctgaacaggaacacccagaaggtgaggtctctgtcccgc
tggagaggacacctcatagagagtgtaggctggaacaagctgctgaggacagagaccaac
actgggcccatcctagtgggaaccagccagggaattatcttcgaggctgagatctctgct
tcagagggaagcctgtttaacaccaaccccgaccagtacttcaaacaggtccactccctg
gaggaggacgggaggcctgctcctgtgtgctgtatagaggtggaacgaggtcccgagtct
aaagtcgtcatcatcgccaccaccaggaagcgtttgttccagttcgtaggtcgtgtggcg
gaggggtccgagcagcaaggcttcagcgccatcttctcacagaatcaggagcttctgccc
agcttccaggagtttccgtttaacatgggctacagtgagatcaccttctacacccccaag
ctcaggtcgtgccccaaggccttcgcatggatgatgggtaacggagttctctacggtcag
ctggactacgtcaagctggactcgctgctcagtgatgtgcaggtgtgggactacacccca
gacatagacttcagtttcaacaagcccatctctatcgtgttgactcagtttcactttcta
ctcctcctccctgaccgcgtcaaagccatctgcaccctcaacgggcaggtggtgtacgag
gatgtgttccctgataagttcggcactctgaagaagatgattaaggacccagcaggaggc
ctggtgtggatctacactgagaaggccgtctttagataccacatccagagagaagccagg
gatgtgtggcagatgtacatgagcatgaacaagtttgacctggctaaggagtactgccgg
gaccggccagagtgcatggacatagtcctggctaaagaggcagaacactgcttccaggac
aaacgatacctggagagcgctaagtgctacgctctgacccagaactactttgaggagatt
gcgttgaagttcatcgaggcgaaacaggaagaagctctgaaagagttccttctgaagaaa
ctcaacaacctgaagcagagtgagaagacccagatcaccttactggtcacctggctgact
gagctctacctgaaccgcctggggcttctccaatcagacgaggggaaacatggggtgttc
caggagacgcgtgatgagttccggaagttcctcagtagttccaaacacaaggagtgtctc
tataacaaccgaacgaccatctatgacctgctggctagccatggcaacgtggacgacatg
gtctacttctctgtcatcatgcaggactatgagagggtgatctcccatcactgtcagcat
gatgactacagcgccgccctggaggtgctctccaagcactgcgacgagaagctattctat
aagttttccccaatcctcatgcaacacatacctaagaaggtggtggatgcctggatccag
atgggttccaggctggaacctaagaagctgatcccagccctggtcaactacagtcagatg
ggttcaacacaacaggtcaacgagaccatccggtacatggagttctgtgtctaccagctc
actgtgacagaagaggccatacacaactacctgctgtctctctacgccaagtacaaaccc
gatagtctcttgtggtacctggaacaggctgggtcccacttgtcagacatccactatgat
ttaaagtatgccctgaggctgtgtgctgaacatggttacctccaggcctgtgttctggtc
tataagatcatggagctgtatgaggaagcggtcgatctggccctacaagtggatgtggac
ctggccaagacgtgtgctgacctgcccgaggatgacgaggagttgaggaagaagttgtgg
ctgaagatcgcctgtcacgtggtgcaagaggagaaggatgtgaagaaggccatgaactgt
ctgtccagctgtaacctgctcaagatcgaagacatactgcccttcttcccggacttcgtc
accatagaccacttcaaggaggctatctgcagctctttacaggagtacaaccagcatata
gacgagctgaagcaggagatggaggaggcgacggagagcgccaagcggatcagagaggac
atccaggagatgaggaacaagtacggggtggtggagaaccaggagaaatgtgctgcctgc
gacttccccctcctcaacagacccttctatctgttcctctgtggtcacatgttccactac
gactgcctcttcctggaggtgacccctcacctgtccacctacaagcagactaaactaggt
gagctgcagaagaggttggctgcagccactcagacctccaagtcccgccaccgccccgcc
cccaaggagaaggaggaggggggcgacaccgccagcctggggaaaggaagcgccggggtc
agccgagagcagatcaagtccgacatcgatgacatcatcgcctgcgagtgcgtgtactgc
ggcgagctgatgatcaagtcgatcgacaagccgtttattgatccacagaagtttgaggag
gagaagtccagctggctctga
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