Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139414909
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Entry
139414909 CDS
T10872
Name
(RefSeq) serine/arginine-rich splicing factor 5-like isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
ocla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139414909
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
139414909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139414909
Spliceosome [BR:
ocla03041
]
Common components
Common spliceosomal components
SR proteins
139414909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
Nup35_RRM_2
RRM_5
PRP38_assoc
SET_assoc
Motif
Other DBs
NCBI-GeneID:
139414909
NCBI-ProteinID:
XP_071018624
LinkDB
All DBs
Position
8:complement(8388839..8403861)
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AA seq
334 aa
AA seq
DB search
MSGCRIFVGRLNPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGK
ELCNERVTIEHARVRLRGGRGRGGDRGGGGGGGGGGGGGGGGGGGRFPDRYGRGSQDSRR
TNQPSGQPAENPPPMRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVV
EFASYSDLKNAVEKLSGKEINGRKIKLIEAAKKRGSRSRSRSESSSRSRSRNRSPSRSRT
PRRSRSHSPKRDYNRSRSRSHSGSPAPRGGAGGAAPGSPPPRAKETSSTSSKRPSKPSKS
ASPHSPPPAQRAPSRSPSRSRSRGSRSPSTDSRH
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgagtggatgccgcatatttgtgggccggttgaacccgtccgccagagagaaggacgtg
gagagattctttaaaggatacggtcgcatccgagacatcgacctcaagaggggctttggt
tttgtggagtttgatgatcccagggatgctgaggatgccgtttatgagctggacggcaag
gagctctgcaacgagagggtaaccattgagcatgcccgagtgcgcctgcgtggtggccga
ggacgcggtggggacagaggcggcggaggaggaggtggtggtggtggagggggaggagga
ggagggggtggtggccgtttcccagatcgctacggccgtggctcccaggatagtcggagg
acaaaccaaccaagtggacaaccggcagagaaccctcctccgatgcgtacggagaaccgt
ctcatcgtggagaacctgtcatctcgtgtcagctggcaggacctgaaagatttcatgaga
caggcgggggaagtcacctttgcagatgcccaccgccccaagctcaacgaaggggtggtc
gagttcgcttcttacagcgatctgaaaaacgctgttgagaagctgtctggcaaggagatc
aatggaaggaaaatcaaactgatcgaggcagctaagaagaggggttccaggagtcgctcc
cgttcagagagctcctctcgttcccgttcccgtaaccgttccccgtcccgctccaggaca
ccccgtcgttccaggtcccactcccccaagagggactacaaccgctcccgttctcggtcc
cacagcggctcccctgccccccgtggtggtgcaggaggagccgcccccggttccccaccg
cccagggccaaggagacctcctccacttcctccaaacggccctccaagcccagcaagtct
gcctctccccactcccctccccctgcacagcgtgcaccttccaggtcaccttccaggtct
aggtctcgtggctctcgttccccgtccacagacagccgtcactga
DBGET
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