Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139415013
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Entry
139415013 CDS
T10872
Name
(RefSeq) AT-rich interactive domain-containing protein 1B-like isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
139415013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139415013
03021 Transcription machinery [BR:
ocla03021
]
139415013
03036 Chromosome and associated proteins [BR:
ocla03036
]
139415013
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
ARID
139415013
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
139415013
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
139415013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
139415013
NCBI-ProteinID:
XP_071018845
LinkDB
All DBs
Position
8:complement(15967962..16051203)
Genome browser
AA seq
2257 aa
AA seq
DB search
MAAQVATALTSTGKKRSSLTSSVSQDFKSAKSGVVGGAGLGVGNGTIVHAINVERNHHEL
NPNRARVFPVNNNSSQREKESGDSRSESFSTSNCSMSSGSMETGTLVSHKVKNVGVGDPP
PSHHHTPPQQQPFNQFIQHQQRQIHNSQQSIHGESGNRQHGGKENVVLGNQVELHQQQQM
LHKSEEEDQPGKTEDRINSRYDHASLGTTNNINPSQSVNSSVLEINNSYYGKGRRGPCFD
QHGGQQSPGSGIIHSVQQNNMDQLQQNSHEGYQNNPYNHYPNYRPGYGNSGYGMMSPSRH
GNNMMGPVSNTAAANHSRAAMAAASSSGSANIGGFHRFPGQSQQHPSGATPTLNQLLTSP
SPMMRGYGSGYQDYTNPSAEQQQSSMGLTKDLSSQYGSTTHSWGGQERNHPAMSPGNNGQ
GSGRSQVPPIDAMAMKRSQLYGMGNNPYSQQQQGGGGSYPGQPYGSPFPHRYPMGMPGRG
QMGMSGMHYPQQQQQMAAQYRQQQGGMSGYCQPQGQPPYSSPPQQQPAAPTQPPYMQARP
LPQQEVSQEGYVNRAQSAMTPGKPNHEEMGLSQQDRPSSLPDLSGSIDDLPTGTEVAISS
AVSASGSTSSQGEQSNPAQSPFSPHMSPRLRSGPSPSPVGSPVGSSQSRSGPISPASVPG
TQMAPQTPGNMSDVGSHSTLSQSPMSQERGFPPAMQRNTTVPQQSGQGPAMSPHSSPGGS
MHPQSSYHQQQLQGGPSPSYGPQTSQYGPQGNYPRPPNYGGTPSANYSGPGPGMSNSLGM
NANSPMHGQGPGQPCGSMPAGRGLGPGVSGRPHLGANTNTMAPTSPSMPQPAGQGQGMRP
PLPSVNQEAGLGPGTNAMQGPNAGPNPSAQGRPPYARSPAYPGLSCPGTCPRLSPHHSPS
PHPHHSPSPCPPHHTQVSSAQSHPMMQQADQYGQGMTPMPHHPGMSPRGMSSSPGGPYSQ
QPGANTSGRMTPQGPQPPYNAPSGPMLMGGEGMVCPTDPKPRPPEQYRESNTPGPAAEPP
PKPKKTSPATMTNEKICILYEMGVEPERQVWVDRYLAFMEERGTPVPMLPAVGRKPLDLC
RLYLCVREIGGLAMVNKSKKWRELSTHLNVGTSSSSASSLKKQYIQYLFAYECRVERGEE
PPLEIPGETKKQAKIQPPSPANSGSLQGPHTPQSTGSSSMTEMSEGMKLPTPATTPHATP
QPGNRNSVGIRVQDPFSEVSDPAFHKRGPMPSGAPYQQVGGSADPSMRMQYDANKDPYEG
PRKGPGGSEPYRPGQMPSGAMQDMYPRGLPSGAMPVMGMGPGPRSQYPYGPGYDRRPDLV
MGSEGGVPPPGGQNNMVPSSGDPSMYSANRYPHQRPHGHENYGQQYPHGPMPYGSHQSGM
YPQQGYKRPVGQEGMYGPPAKRHEGEAYDMQQYGGQQPDMHRQYGGGYMGPEHRPMQGQY
PYPYSRDRMGAIQGPQQHGMMSGGPPFPSGASPEGPQANMWHPRTDMGYPGPYPGRQGQG
PPYPVMGRGLGDDPEGRALQDGQWTSGHPGQRQSPYPCPSSSSMPPMASRQPPSSYQSNP
AMANHITRAPSPFARPMGGPGPLSPNNGGHYMASLKKAGMPGSMPGSHSGGMSGQGILPL
HRDISFPVGSVEATLPKLKVRRRLTSKETGTPEAWRVMMSLKSGLLAESTWALDTINILL
YDDTTVSSFTLSQLPGFLELIVEYFRRSLISIFGILDEYEVGTEGQKMLLGPITDQEEGL
TVAELDSQLDEEQRDSGLEKTTANSNTEEAVPEEKEEPVEVTLKEKVEGEEKEGAATEQS
QTPEPRPKQASKYDKLPVKVEEDQVEEDQELSLSRGFTSGLLHWKAGGGDSTAHIQTHFE
IRGEETNSKPTERKEREDKTETTEEERKAVVEKSMTETATMDDMLSAWPGSLSERNGLPG
TQTQSPIFTLLEDEPRCWDEAPLSTAEPWQDALARRCVCISNIVRGLSFIPGNDNDMSCH
PGLVLILGRLVLLHHLHPQRRRMPPSYQREEEQGRACSKDQWWWDCLSALRENTLVTLAN
IAGQLDLSLYPESICLPILDGLLHWMVCPSAEAQDPFTTASCSSSLTPQRLVLECLCKLS
IQDNNVDLLLATPPFSRQEKLYATLVHHVGERKSQVCREMAVAVLSNLAQGDPTAARAIA
LQKGSVGILIGFLEDCVAMCQHQQGPHSLLHPAAHPQPPSVNMMCRAAKALLAMAKEHRT
ELVLYESRLLDISLSSVLSSAVAAIMCEVLFKIGRSS
NT seq
6774 nt
NT seq
+upstream
nt +downstream
nt
atggccgcacaagtggcaacagccctaacatcaactggtaagaaaaggtcgagtttaact
agcagcgtgagtcaagattttaaatctgctaaatctggagtagttggtggagctggactt
ggggtaggaaacgggactatcgttcatgctattaatgtagaacgcaatcaccatgaattg
aacccaaacagagctcgagtttttcctgtaaacaacaattcgagtcaacgtgagaaggaa
agtggagattctagatcggagtctttttcgacttcaaattgtagcatgagttcgggaagc
atggagacgggaacgcttgtcagtcataaagtgaaaaatgttggtgtcggagatcctcct
ccatcgcaccaccacacacctccacagcaacagccattcaatcaattcattcagcaccaa
caacgccaaattcacaacagccagcagtcgatacatggagaaagtggaaaccgccaacat
ggaggaaaagagaacgttgttttagggaatcaagtggagctccatcagcagcaacaaatg
ctacataaaagtgaggaggaggaccaaccgggcaaaacggaggaccggattaacagcagg
tacgaccatgccagtttgggaacaactaataacatcaacccgtcccaaagtgtgaacagt
tcagttttggagataaataatagttattatggaaagggaagaagagggccttgctttgat
caacatggcggacaacaaagcccagggtctgggataatacattcggtacaacagaacaat
atggatcaacttcaacaaaactcccacgaaggataccaaaacaacccgtacaatcactac
ccgaactaccgacctggctacggtaacagtggatatgggatgatgagtccctctcggcac
gggaacaacatgatgggcccagtcagcaacactgctgctgctaatcatagcagagctgcc
atggctgctgcctcttcttctggtagtgcgaatattggagggtttcacagatttccaggg
caaagtcagcagcatccgtcgggggccaccccgactctaaaccagttactgacgtccccg
agccctatgatgcggggctatggcagtggctatcaagattacactaatccttctgctgaa
caacaacaatcaagcatggggctgactaaagacttgagctcccaatacggttcaacaact
catagttggggaggacaagaaagaaatcaccctgccatgagccctggaaacaacggacaa
ggaagcggcagatcacaggtgccaccaatagacgccatggcgatgaagcgctctcagctg
tacggcatgggcaacaacccttactcccagcaacagcagggcgggggcggctcctaccct
ggccaaccatacggatcaccttttcctcaccgctacccaatgggaatgcctgggaggggt
cagatgggcatgagtggaatgcactatcctcaacagcagcagcagatggcagctcagtat
aggcagcagcaggggggcatgagtgggtattgccagccacaaggccagcccccgtactcc
agccctccccagcagcagcctgcagcccccacacagcctccctacatgcaggcacgtcca
ctgccacagcaggaggtgtcacaagagggctatgtcaatagggcccaatctgctatgacc
cctgggaagcccaaccatgaggagatgggcctcagccagcaggacagaccctccagtcta
cctgacctgtctgggtctatagatgaccttcccacgggcacagaggtggctatcagctca
gcggtcagtgcttcggggtccaccagcagccagggcgagcagagtaacccggcccagtct
cccttctcaccccacatgtcccctcgcctgcgtagtggcccctccccctcccccgtggga
tcacccgtgggatccagccaatcgcgctccggaccgatctcccccgccagcgtcccaggc
acccagatggccccacagacccctgggaacatgtctgatgtgggttcccattccaccctg
agccagtcccccatgtctcaggagagagggttcccacctgccatgcagcggaacaccaca
gtcccccagcagtcaggtcagggacccgccatgtcccctcactcgtcccccgggggctcc
atgcacccccaaagctcctaccaccagcagcagctgcaggggggccccagcccctcgtac
ggaccccagaccagccagtacggcccccaaggtaactaccccagaccccctaactacggc
gggacccccagtgccaactacagcggccccggccctggcatgagcaacagtctgggcatg
aacgccaatagccccatgcacggccagggccctgggcagccctgtggctccatgcccgcc
gggcgaggcctgggcccgggggtcagtgggcgaccccacctcggtgccaataccaacacc
atggcccccacctctcccagcatgccgcagcctgccggacagggccagggcatgagacca
cccctgcccagtgttaaccaggaggcaggtctgggtccgggaaccaacgccatgcagggg
cccaacgctggtcccaacccttctgcacagggcaggcctccctacgcgcgctcccctgcc
taccccggcctgagttgtcctgggacgtgccctcgcctctctccccatcactctccctcc
cctcacccccatcactctccttccccctgtcccccccaccacacccaggtcagcagtgct
cagagccaccccatgatgcagcaggctgaccagtatgggcagggaatgacccccatgcct
caccatccaggcatgagccccagagggatgtcctccagccctggtggcccctacagccag
cagccaggggccaacacctctgggaggatgaccccacaggggccccaacctccctacaac
gcaccctccgggcccatgcttatgggaggagaggggatggtgtgtcccactgaccccaaa
ccgagacctccagagcagtacagggagagcaatactcctggtcctgccgccgagccccca
cctaaacccaagaagaccagcccggccaccatgaccaatgagaagatttgcatcctgtac
gagatgggcgtagagcccgagaggcaggtgtgggtggaccgttacctggccttcatggag
gagaggggcacgcctgtacctatgctgccagccgtgggcaggaagcccctggatctgtgc
cgcctctacctgtgtgttcgagaaataggaggactggcaatggtgaacaagagcaagaag
tggagggagctgtccacccatctcaacgtgggcacgtccagcagctctgccagctctctg
aagaagcagtacatccagtacctgtttgcctatgagtgcagagtggagcggggagaggag
ccgccgctggagatcccgggggaaaccaagaaacaggctaagatccagccaccctcaccg
gccaactcgggctccctgcagggtcctcacaccccccagtctacaggtagcagttccatg
actgagatgtcagagggcatgaagcttcccactcctgccaccacaccacacgcgaccccc
cagccaggtaacaggaacagtgttggtatccgtgtccaggatcccttctcagaggtcagt
gaccctgccttccacaagcgagggcccatgccctctggcgccccctaccagcaggttggc
ggtagtgcagacccctccatgaggatgcagtatgatgccaacaaggacccctatgaaggg
ccccggaaggggccagggggcagtgagccctatagaccaggtcagatgcccagcggtgcc
atgcaggacatgtacccccgtggtcttccctcaggagccatgccagtgatgggtatgggc
cctggcccgcggtcacagtacccctacgggcctggctacgacaggagaccagaccttgtg
atgggttcggaggggggcgtgcctccccctgggggccagaacaacatggtaccttccagc
ggtgacccaagcatgtactctgccaaccgatatccccatcagcggccacatggacatgaa
aattatgggcagcagtaccctcacggccccatgccctatggctctcaccagtctgggatg
tacccacaacagggctataagaggccagtgggacaagaggggatgtacggtccccctgct
aagcgccatgagggtgaagcctacgacatgcagcagtacggagggcagcagccagacatg
caccgccagtatggagggggctacatggggccggagcacaggcccatgcagggccagtac
ccttacccctacagccgagaccgcatgggagccatccaggggccccaacaacacggcatg
atgagcggaggtcctcccttcccctccggagcctctccagagggcccccaggccaacatg
tggcaccccaggacagacatgggctaccccgggccctaccctggccgacagggccagggg
ccaccttaccctgttatgggccggggtctgggggatgacccagagggaagggccctccag
gacggccaatggacgtccggacacccgggccaacgccagtccccatacccatgcccctct
tcctcctccatgccccccatggcttcccgacagcccccctcctcctaccaatctaaccct
gccatggccaaccacatcactagagcccccagccccttcgcccggcccatggggggaccc
ggacccctttcccccaacaacgggggccactacatggcctctctgaagaaggcagggatg
cctgggtccatgccaggctcacacagtggggggatgtcagggcagggcattctacctctc
cacagagatatcagcttccccgtggggtcagtggaggccaccctgcccaaactcaaggtc
cgacgcagacttacttccaaggagaccggaaccccagaggcgtggcgtgtgatgatgtct
ctgaagtcaggtctgctggctgagagcacatgggcgctggacaccatcaacatcctgctg
tatgacgacaccactgtgtcctccttcaccctgtcacagctgcctggcttcctggagctg
atagtggagtacttccgccggagtctgatctccatctttgggatcctggatgagtacgag
gtgggcaccgagggccagaagatgctgctcggaccaatcacagaccaggaagaggggctt
accgttgcagagcttgacagccagttagacgaagagcagagggacagcgggctagagaag
accacagccaacagcaacacagaggaggcggtcccagaggagaaggaagagcctgtggag
gtgactttgaaagagaaggtagagggggaggaaaaggagggggccgccaccgagcagtcc
cagaccccagagcccaggcccaaacaggccagtaagtacgacaagctgcctgtgaaggtg
gaggaggaccaggtggaggaggaccaggagctcagtctgtccagggggttcacctctgga
ctgctgcactggaaggctggagggggggactccactgcccacatccagacacactttgag
atacgtggcgaggagaccaacagtaagcctacagagaggaaagagagggaggataagaca
gaaacgacagaggaggagaggaaggctgttgtagagaagagcatgactgagacagccact
atggacgatatgctgagtgcctggccaggctctctgtcagagaggaacggtcttcccggg
acgcagacccagagccctatcttcaccctgctggaggacgagcctcgctgctgggacgag
gcgcccctctccacggccgaaccctggcaggacgccctggcccgccgctgcgtttgcatc
tccaacattgtccgcggcctctccttcatcccggggaatgacaacgacatgtcctgccac
cctggcctggtgctgatcctggggcggctggtcctgctgcaccacctgcacccccagagg
aggaggatgcctcccagctaccagagagaggaggagcagggccgggcctgcagtaaagac
cagtggtggtgggactgtttgtcagccctcagggagaacactctggtcaccctggctaac
atcgcaggtcaactagacctgtccctctacccagagagcatctgtctgcccatcctggac
gggctcctccactggatggtgtgtccctctgccgaggcccaggaccccttcaccacggca
agctgttcctcctccctcaccccccagagactggtgctggagtgcctgtgcaagctgagc
atccaggataacaacgtggatctcctgctggccacgccgccgttcagccgccaggagaag
ctctacgccaccctggtgcaccacgtgggtgagcggaagtcccaggtgtgccgggagatg
gcagtggctgtgctctctaacctggcgcagggggacccgaccgcggcgcgcgccatcgca
ctgcagaagggcagcgttgggatactcatcggcttcctggaggactgcgtggccatgtgc
cagcaccagcagggacctcacagcctgttacacccagcagcacacccccaaccccccagc
gttaacatgatgtgcagggccgccaaggctctgctggccatggccaaggagcaccggaca
gagttggttctctacgagagcaggctactggatatctccctgtcctctgtgctgagctca
gccgtggcggccatcatgtgtgaagtactgtttaagattggacgctcctcgtga
DBGET
integrated database retrieval system
