Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139415051
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Entry
139415051 CDS
T10872
Name
(RefSeq) CASP8-associated protein 2-like isoform X1
KO
K25593
CASP8-associated protein 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139415051
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
139415051
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding_7
Myb_DNA-binding
YabA
MscS_porin
INO80F
Endotoxin_C
Motif
Other DBs
NCBI-GeneID:
139415051
NCBI-ProteinID:
XP_071018911
LinkDB
All DBs
Position
8:18089898..18116747
Genome browser
AA seq
2054 aa
AA seq
DB search
MEGDLMDEVYGDLSQDNCNTVAAIDDDSMDIYSGLASPRIYPNAERNCTLLSPQNLSSMD
LYEEIITEEQQDKDSSYNELRTRYNAAQSQIEELLRRLQQIETKNTTLNTENSRLKKNIC
ALIKTAKMEVVRKDKEINRLSQSFRPERGPAAHHQSQMNCLKNQGPMRLNPMGPYQPEVP
TRLNPTGPYQPEVPTRLNHTVPYQPEVPTRLNPTGPYQPEVPTRLNPTGPYPPEVPTRLN
HTGPPPPTQLPGSKGCVVKDLHQLHCQDRDVVLPQPPSDARNFRPPLPVTSRGDSEASVK
GTYSSVSSSSKDSVKRHHTRELGLSDKPKQTKHREGRGESPRLSESKEQRHKNSPDVNKE
SHSDERNRSHRAQKDIGKYDSKSNKSRYPHPSDVEVHRRSDKSKSPHSDILHCTASSYRT
SKGLSKVSADILSTGSSRHDKVLSFDKDDDKRSISIKDISSKNRMHAYSNQASLTKRSSE
YFNRKGGTSPPRDHRRKKERKREDEIRKEKNKSGERKSSCTERGKEREEKRTKEHNRCSA
DVSKDKNMVNGKVREQKTHEESEVLPPEAKVAEKSSKEENGPNRKLSFMETLNLTLSPVK
TPRQSAEVKEQEEGTPPDEVPEDQSAEDSGQPHLGELLVVDKIHSSVVDTHEVFENPVIQ
PSSEISKPPQPESMESRHTERESCQDAEKPLSEATVAKERHKCQLEVEDSTVQDGSEGRP
ELPEAMEGQRTKPTTPEPLREDCVSAPDCDIVLKTPLESRLEKCDSERKTGTSKDLTAAA
VSATTTTVTENCGNNSNTDTGLSANGLTHEHSTGDSLVIITDKSNSETPSALVCKSQAVE
TVTQDPPAAVCVGHPAVEGSPGKQSESLKCTPFVQPKGLQQLPASIITNSSLEKNVTEGQ
DVSKDAVSSTISMEVDIGITSEVITDVTEIPVECEKEKTLVEQSSPLSSIGVSKVSSTTG
EVAPSEQYNCGLAETPKKYLNSEPSYTENEEENVEPSSSIPMAHDEDSMMLTLSNLKVIP
HAISPLTSPVRLKTKSQQLPCHSKPAYFKSLCKDFPSATGDSNSKKLEVNQENNNPGCSV
THAAQRDVDETSVHPSSLEELEEGEIVSESEEEETPVMPSSPPMTVRPTRTNKNQPTLKS
SPRLSKKPAKENFKLGSKTLTSPFGSPTSNKTRYKTVQPPLPNAALSTVEEVMAMLAKIR
YECRKKYMKLHSTFPKKTFCGVMDMSFFPSFTDFVDSVSFTKLCSQEDYLKVKLKNIIIS
VLSKLSNNGIVNRIFDQEPLNMKLKLWEFVDVQLDFLFKEIQTALRSVCKSSNGSQSAGA
EKRDSLSGKGVPKLPVKSPKPSVATELKMQQGVTITRTSAPKRLQKEFTECVETSMKRTR
SRTVPPCKTGLGRGKNIKMSFEEDMESVPQTSDPPVIQPPLQNVVEILPSNSSSSAEKTA
TYVRRLSQNGSLHDKPDFEILTEQQASSLTFNLVTDSQMGEIFKCLLQGSDLLETSVSAG
DNHGWSLGTPLKERERFLGVGTPSKVGTPSKLIATWSAISPIKFSSPNSKVQIPLNPSLL
DESCMLEVPSGLPEIRGTPQSSVFSHRSYSILAEDLSGSLTIPSPLKSDNHLSFLHPASG
EPMSAPDSVISAHFSEDALMDGEDATEQDIHLALDTDNSSGASSGGGRTREAPVNPLFHF
KPHLPMQAVVMEKSNDHFIVRIRHANTNSTNSGVNSSSPGSVNSTYQGNNSSSPGSVNST
YQGNNFSSPGSVNSTSLGINSSSLVVNSLSPDINSTKQVVNYTNLGINSSQEVNSSSPGS
VNSTYPGNNATNPENNCAYPCVNFTSPEVISTNPGISPTSADINHGGAESPQTPPGQEKH
GKDEDQPPEKTPSKSPFSEASPPFYLSSLSTSTETASALSSPCLTIIEDTPERDHSKGKT
GKKRTKHHVETKAKRAKREVIPERSMHKKKSSKSPKGKGTGSSKRERSEVITPPQSTPSP
NSLSAKNIIVKKGEVMVTWTRDEDRDILLALKMKGSSPDTFSALSEKLNKTPAQIAKRFS
QLMKLFKKKEKMAN
NT seq
6165 nt
NT seq
+upstream
nt +downstream
nt
atggagggggatttgatggacgaagtgtatggtgatctcagtcaagacaactgcaatacg
gtggcagcaatcgatgatgattctatggatatttattctggtttggcaagtccgaggatt
tatccaaatgcagaaagaaactgcacactcctctcaccacagaatctgagctctatggat
ttatatgaagaaatcataacggaggaacaacaggataaagactcttcctacaatgagttg
aggacaagatacaatgctgcacaaagccaaattgaagagttacttaggcggttgcagcag
attgaaacaaagaatacaacgctgaacactgagaacagccgtctgaagaagaacatctgt
gcgctcatcaaaacagctaaaatggaggttgtgcggaaggacaaggagataaataggttg
agccaaagtttcaggccagagagaggtcctgctgctcaccatcaatctcagatgaactgc
ttgaaaaatcaaggtccaatgagactgaatcctatggggccttatcaaccagaagttcca
accagactgaatcctacagggccttatcaaccagaagttccaaccagactgaatcatacg
gtgccttatcaaccagaagttccaaccagactgaatcctacggggccttatcaaccagaa
gttccaaccagactgaatcctacagggccttatccaccagaagttccaaccagactgaat
catacgggtccacctccaccaactcaactaccaggatctaagggttgtgttgtaaaggat
cttcatcagctgcactgtcaagacagagatgtggtcctcccccaacccccatctgacgca
agaaatttcagaccacctcttcctgtcacctctagaggcgattcagaagcttcagtgaaa
ggcacatattcttctgttagcagttccagtaaggactccgtaaaaagacaccatacacgt
gaactaggcctgtcagacaagccgaaacaaaccaagcacagagaaggcagaggtgaaagt
cccaggctgtctgagtcaaaggagcagcgacataaaaacagtccagatgtaaataaggaa
tctcattcagatgagaggaaccggtcacacagagcacaaaaagatattggaaaatatgat
tctaagtcaaacaaaagcagataccctcatccctcagatgttgaggtacacaggagatca
gataagtctaaaagcccacactcagacattttgcattgcactgcttcctcttaccgtacg
tctaaaggattgtctaaagtcagtgcagacattctatcaacagggtctagtcgacatgat
aaggtgcttagctttgataaggatgacgataagcgtagtataagtattaaagacatttcc
tctaaaaacagaatgcatgcctattcaaatcaagccagtctcactaaacgatccagtgaa
tattttaatcgcaagggagggacaagtcctccaagggaccatcgaaggaaaaaagagaga
aaaagagaggatgagatcagaaaagagaaaaacaagtcaggagaaagaaaaagcagttgt
acagagagaggaaaggagcgcgaggaaaaaagaacaaaggaacataaccgatgcagtgcg
gacgtcagtaaggacaagaacatggtcaatggtaaagtcagggagcaaaagacacatgag
gaatcggaagtgcttccacctgaggccaaagtggctgagaaaagctctaaagaggaaaac
ggtcccaacagaaagttaagtttcatggaaactctgaacctcaccctgtcaccagttaaa
acaccaagacagtctgctgaagtcaaggaacaggaggagggcacaccacctgatgaggtg
cctgaagatcagtcagcagaagacagtggacaacctcatcttggagaattgcttgtagta
gacaaaatccacagtagtgtagtagacacccatgaggtctttgagaacccagttatacag
ccctcttcagaaatctcaaagcctccacaacctgaaagtatggagagtagacatacagag
agagaatcttgtcaggatgctgaaaagcctctgtctgaagccacagtagccaaagagcga
cataagtgccagttagaagtagaagacagtactgtccaagatggctccgaaggaagacct
gagctgcccgaggccatggagggtcagaggactaaacccaccacaccagaacctctcagg
gaggattgtgtttcagctccagactgtgacattgttttgaaaactccactggagagcaga
cttgaaaaatgtgactcagaaagaaaaactggcacgtctaaggatttgactgctgctgct
gtctctgcgactactactactgtcactgagaattgtggaaacaattcaaataccgacact
ggcctatctgctaatggacttacccatgaacattcaactggagactcactggttattatt
actgacaagtccaacagtgaaactcccagtgctttggtctgtaaaagccaagctgttgaa
actgtgacacaagatccacctgctgctgtctgtgtgggacatcctgctgttgaaggtagt
ccaggaaaacaatcagaatctctgaaatgcacaccttttgtccaacctaagggccttcaa
caactgcctgcttccattattactaattctagtctggagaaaaatgtgacagaggggcaa
gatgtttccaaggatgctgtgtccagtacgattagcatggaggtagatatcggcatcacg
tctgaggtcattactgatgttacagagatccctgtggagtgtgagaaggagaaaactctt
gtggaacaaagttcaccattgagcagtattggggtgtctaaggtgagtagcaccacagga
gaagttgcaccatctgagcagtacaactgtggtttggcagagacaccaaagaagtaccta
aattctgagccaagctacacagagaatgaagaggagaatgttgagccctccagctccatt
ccgatggcccatgatgaggactcgatgatgctcacactgagtaatctaaaagtcattcca
catgccataagcccactcacaagcccagtccgcctgaagacgaaaagccagcagctgcca
tgtcacagcaaacctgcttacttcaagagtctttgcaaagattttcccagtgctactgga
gattctaattcaaagaagttggaagtgaatcaggagaacaacaatcctggctgctctgtc
acacatgctgcacaacgagatgtggatgagacatctgtccatccttccagccttgaggaa
ctggaagagggtgaaattgttagtgaaagtgaagaggaagaaactccagtcatgccaagt
tctccacccatgacggttcggcccacaagaacgaataaaaatcaaccaactctcaagtca
tcccctagactttcaaagaagccggccaaagaaaattttaaactcggaagtaaaaccttg
acttcaccatttggaagccccacatcaaacaaaacccgctacaaaactgttcaacctcct
ttacccaatgctgccttgtctaccgtggaggaggttatggccatgcttgcaaagattcgc
tatgagtgcagaaaaaagtacatgaagcttcattcaacattccctaagaaaaccttctgc
ggtgttatggacatgtccttttttccctcttttacagactttgttgatagtgtaagcttt
actaaactatgcagccaagaagattacctcaaagttaaactgaagaacatcatcatttct
gttttgagtaagttatcaaataatggcattgtcaaccgcatctttgaccaagaaccactt
aatatgaagttgaaactgtgggaatttgtggatgtgcagttagacttcttattcaaggag
attcaaactgcactgagaagtgtttgcaaatcctcaaacggaagccagtcggcaggagca
gaaaaaagagacagtctctctggaaagggtgtacccaagctgcctgtgaagtcccccaag
ccatctgtggccactgaacttaaaatgcagcagggagtgaccataaccagaacttctgca
ccaaaaagactgcaaaaggaattcactgagtgtgttgaaaccagcatgaaaagaaccagg
tctcggactgtccccccttgcaaaacaggtcttggaagaggcaaaaatattaaaatgtcc
ttcgaagaggatatggaatcggtgcctcaaacctcagatcctcctgttatccaacctcct
ttgcaaaacgtggtagagatcttaccatcaaacagctcttcatctgctgagaaaacagca
acctatgttcgccggctgtctcaaaatggctcactccatgacaagcctgactttgaaatc
ctcacagaacagcaagcctccagcctaacgttcaacctggtaacggactctcagatggga
gagatcttcaagtgtcttttacaagggtctgatctgctagaaacgagtgtctcagctggg
gacaatcatggctggtcccttggtactcctctgaaagaaagggagcgtttcctaggcgtt
ggtaccccaagtaaagttggtactccctctaaactcattgccacatggtcagctatttca
cctatcaagttttcctctccaaattcaaaagtccaaattccattaaatccatctttgttg
gatgagagttgcatgttagaggtgccctccggcctaccagaaatcagagggacaccacag
tccagtgtgttctcgcatagatcatattccatcttggcagaagatctgtctgggtctctc
acaattccctcacctctcaagtctgacaatcacctcagctttttgcacccagccagcggc
gagcccatgtctgctccggacagtgtcatcagtgcacacttcagtgaggatgctcttatg
gatggggaagacgctacagagcaggacattcaccttgccctggacacggacaactccagc
ggtgcatcaagcggtggtggcaggaccagggaggctcctgttaaccccttatttcacttt
aagcctcacttgcccatgcaggcagtagtgatggagaagtcaaatgatcatttcattgtg
aggatacggcatgcaaacaccaactccaccaactcgggggtcaactcctcaagcccaggc
agtgtcaactctacctaccaaggaaataactcctcaagcccaggcagcgtcaactctacc
taccaaggaaataacttctcaagcccaggcagtgtcaactccacaagcttaggaattaat
tcatcaagcctagtagtgaattctttaagcccagacatcaattccaccaaacaagtggtc
aactacaccaacctaggaatcaactcaagccaggaagtcaactcttcaagcccaggcagt
gtcaactctacctacccaggaaataatgccaccaacccagaaaataactgtgcctaccca
tgtgtcaacttcacaagcccagaagtaatttctaccaacccaggcatcagccccacaagt
gcagacatcaatcatgggggtgctgagagccctcaaacaccaccaggacaagaaaaacat
ggtaaagacgaagatcagcccccagaaaaaactccttcaaaatcccctttttcagaggcc
agtcctcctttctacctttccagcctttccacaagcaccgaaacagcatctgcgctatct
tcgccatgcctcaccatcatagaagacacaccagagagagaccacagcaagggtaagacc
gggaaaaagcgcacaaagcaccatgtggaaactaaagcaaagcgggctaaaagggaggtg
atcccagagaggagcatgcataaaaagaagtcctcaaaaagtcccaaaggaaaggggact
ggaagctccaagagggagagaagtgaagtcattactccaccccaatctaccccatcaccc
aacagcctgtctgccaagaatatcatagtaaaaaaaggtgaagtgatggtgacgtggaca
agggatgaagaccgagatattctcctcgcactgaagatgaaaggttcctctccagatact
ttctctgccctttcagagaaattgaacaagacacccgctcagattgcaaagcgattttcc
caactgatgaagctttttaagaagaaggagaagatggcaaactga
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