Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139415266
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Entry
139415266 CDS
T10872
Name
(RefSeq) protein PALS1-like
KO
K06091
MAGUK p55 subfamily member 5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
139415266
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
139415266
Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
PDZ domain-containing proteins
MAGUK family proteins
139415266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Guanylate_kin
L27_N
PDZ
L27
PDZ_6
SH3_2
PDZ_2
SH3_1
SH3_9
PDZ_Tricorn
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
139415266
NCBI-ProteinID:
XP_071019345
LinkDB
All DBs
Position
8:complement(31206676..31240357)
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AA seq
684 aa
AA seq
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MITSHRNGGPGYVIEDPMGPVSGTEGLGSEAKLQQRERAVDCPPGDKVVGTGSSVVQGSR
CSAQMERIQRYQEELRRKREENANKAKHEIDLNASLRLKKLAQNPAKTGIDNPTFEAPKA
GKETKDGSPPLGGDTVEELEELLEALRRVQSCLVDAQSQADVALVLGLLHKEDFQSAFAV
HSAVAQQMQPRGSPPLPLTAKARSLYQEVQCILQSSHQEEGVELRSLLTTPHFQALMQAH
DSVAEQELEPDPEERLIQYLGETVKLVRLEKASDIPLGATVRNEMDSVVVSRVVKGGTAE
RSGLLAEGDEILEINGVPVRGKNVNEVHDLLVEMHGTLTFLLIPSSQNKTPSHRQTVMHV
RAYFNYDPSDDPYVPCRELGLSFQKGDILHIISQDDPSWWQAYRDGDEDNQPLAGLVPGK
SFQQQREAMKKNIVVRNPDSPGKLWCAMKNKKQRKKTMYNPNRNVDYYADEILTYEEMAL
YHQPANRKRPIALIGPPNSGQDELRQRLLSIEPDRFAGAVPHTTRNPRIHEKNGREYHFV
NQLAFEADVAAGKFIESGEYERNLYGTSSDSVRQVINSGRIGLLCLHTKSLRVLRSSNLK
PYVIFIAPPSQERLRTLLAKDGKNPKPEELKELIEKAREMEQAYGHLFDAAIVNGEPDTA
FHELLRLINKLDTEPQWVPSSWLC
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgatcacttcccacaggaacggaggacccggatatgtaatagaggacccaatggggcct
gtgagtggcacagagggtcttgggagtgaagccaagctgcagcagagggagagggctgtg
gactgcccccctggggacaaggtggtggggactgggagcagcgttgtgcagggttcccgg
tgcagcgcccagatggagaggatccagcggtaccaggaagagctgaggaggaagagggag
gagaacgccaacaaagcgaagcatgagatcgatctcaacgcctcactcaggctcaagaag
cttgcccagaacccagccaagacgggtatcgacaaccctacgttcgaagcgcctaaggcg
ggcaaggagaccaaggatgggagccccccgcttggtggggacacggttgaggagctggag
gagctgctggaggccctgcggcgggtgcagagctgcctggtggacgcccagtcgcaggcc
gacgtggctctggtgctgggcctgctgcacaaggaggacttccagagcgccttcgccgtc
cacagcgccgtggcccagcagatgcagccgcgtggcagcccgcccttgcccctcaccgcc
aaggcccgcagcctttatcaggaggtgcaatgcatcctacaatccagtcaccaggaggaa
ggtgtagagctcaggagcctactcaccaccccccacttccaggctctgatgcaggcccat
gatagtgtggcggagcaggagttggagccggacccagaagagagattgattcagtacctg
ggtgagaccgtcaaactggtgcggctggagaaggccagcgacattcctctgggcgccacg
gttcgtaacgaaatggacagcgtggtggtgagtcgtgtggtaaagggcgggacagccgag
cggagcggtctcctggctgagggagatgagatcctggagatcaacggcgtgcctgtccgc
gggaagaacgtcaacgaggtccacgaccttctggtggagatgcatggcactctgaccttc
ctccttatccccagttctcagaacaaaacaccctcacacaggcagactgtgatgcacgtg
agggcttactttaactacgacccgtctgatgacccgtacgtgccgtgcagggagctgggc
ctgtcttttcagaagggagacatcctccacatcatcagccaggatgaccccagctggtgg
caggcctacagggacggggatgaggacaaccagcccctagccgggctagttccagggaag
agcttccagcagcagagagaagctatgaagaaaaacattgtggtcaggaatcctgacagc
ccagggaagctttggtgtgcaatgaagaacaagaagcagaggaagaaaaccatgtacaac
cccaacaggaacgttgactactatgccgacgaaatcctgacctatgaggagatggcactc
taccaccagccggccaatcgcaagcgacctattgccctgattggtccacccaacagcggg
caggacgagctgcggcaaaggctgctgtccatcgagccggacaggttcgccggcgccgtt
ccacatacaactagaaacccacgcatacatgagaagaacgggagggaataccactttgta
aaccagctggcttttgaggcggatgtggcagcggggaagttcattgagtctggggagtac
gaaaggaacctgtacggcaccagcagtgactcggttcgacaggtcatcaactcaggcagg
atcggtctgctgtgcctgcacactaagtcactgcgggtactgcggtcctccaacctcaag
ccctatgtgatcttcattgcgcctccctctcaggagcgattgcgcaccctgctggccaag
gatggcaaaaacccaaagccagaggagctgaaggagctgattgagaaggcccgggagatg
gagcaggcctacgggcacctgtttgacgcggccattgttaacggcgagccagacacggca
ttccacgagctcctgcggctcatcaacaagctggacacggagccccagtgggtgccctcc
tcctggctgtgctag
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