Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139415894
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Entry
139415894 CDS
T10872
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04382
Cornified envelope formation
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139415894
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139415894
09142 Cell motility
04820 Cytoskeleton in muscle cells
139415894
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139415894
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139415894
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139415894
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
139415894
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139415894
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
139415894
NCBI-ProteinID:
XP_071020143
LinkDB
All DBs
Position
9:complement(12047467..12136354)
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AA seq
1682 aa
AA seq
DB search
MKKNVKSLRNLAMGLMVVTLCITVQESESAACHGCAAGSRCDCSGVKGVKGERGLPGLQG
QLGVPGFPGPEGPIGGRGEKGSDGPSGTGGPKGIRGPPGLPGFPGTPGIPGLPGQDGPPG
PKGTAGCNGTKGERGFPGSPGFPGLEGRLGPPGFPGQKGDPGDIITNERFGQIGGVGLPG
RPGVPGDQGPSGLSGPTGPPGPRGYEGRPGPPGLPGPKGNMGLNFQGPKGDKGNSGLQGP
PGPPGQVGEQTRPSVSSIQKGETGDQGLPGPPGDPGYPGPTGSSGGLKGEKGENGEAGKR
GKPGKDGDPGPAGFPGSKGDPGGPGLPGRDGDRGAKGDRGYPGRPGVQVSNGPATVGPKG
EPGRPGETGRKGDRGQPGLSGPPGQPGTPGIGGGGQPGLPGYPGERGQKGDEGQPGISIP
GNPGRGGAPGLQGRPGPPGPPGISNGGFNCTGGAPGLPGQIGNIGFQGETGQKGEKGDTC
VNCFSRGNSVPGAQGPPGPPGFPGGPGGPGAKGDRGFPGGPGPSGSSGLPGPQGAPGFPG
EKGDPGETTAVNGVSGDKGDTGFPGPAGLPGLDGRPGRDGGPGAPGAKGSSGSLLVKGER
GPPGEPGLQGLPGDRGATGSPGFGPQGPPGEKGVQGVSGRTGTPGAPGGKGEPGQTVAEK
GLPGPRGQDGDPGLPGNPGNPGGPGQPGFPGSPGPKGDPGLSGIGLPGPPGAKGFPGSPG
LPGGPGGPGRPGVDGFPGQPGAPGAKGEPGFGLSGPQGSPGFPGDKGLPGPKGDSGFPGN
PGLPGRSGFDGGPGAKGDSGIPGRTGDRGPQGSPSIGSQGVPGPVGPPGPIGAPGYSGNN
GEKGDPGLPGPGITGLPGDRGSPGFPGSPGGVGPQGNPGGPGRDGIPGLPGGKGDMGVMG
TPGSLGSPGNPGGPGFPGPKGDDGFPGRPGGTGSPGLKGDRGDPGLVGLPGPSNSPPSIK
GAKGDAGEPGLRGQPGQKGISGLPGDAGIPGQDGRPGLPGPQGPKGDMGIPGGSGSPGSQ
GLKGNMGEMGFPGPTGAKGTPGQLGRSGVPGSSGAPGFPGAKGDPGSPGFGATGATGPKG
EPGRSGFPGQNGVKGTPGTPGLPGFPGGPGAKGDPGLPGFQGSPGIPGPKGLDGTPGNPG
LAGGPGRPGENGRAGSPGFPGDKGQAGRDGIPGPAGVKGDQGLSGFGGPGSPGLPGSPGA
KGDFGAPGLPGNPGFPGQKGEMGFPGQPGSPGSIGPPGAPGVALQGPKGNSGSPGPPGRG
GPPGPEGPRGLGGSGGTKGEKGIPGSSGSPGFPGAKGELGSPGFPGIPGPPGGSGLKGDI
GLPGVPGFPGLKGESGNPGSSGLPGDPGDPGPAGIQGDPGVAATPIMLKGERGPPGPSGL
PGNRGSQGPPGQEGRSGQPGQPGDPGPEGPPGFSGAFGRKGDSGPAGQPGQRGYPGPTGS
DGQQGPPGNPGSASVTHGFLISRHSQAEYVPTCPEGTSLIYDGFSLLYVQGNERAHGQDL
GTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPMPMPMSMAPITGEDIKPFISR
CAVCEAPAMVIAVHSQTIQIPTCPSYWEPLWIGYSFMMHTSAGAEGSGQALASPGSCLEE
FRSSPFIECHGRGTCNYYGNTYSFWLATVDQSEMFRKPQSETLKAGNLSTRISRCVVCMK
RT
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaaacgtaaagagtctgcgaaatctcgccatggggttgatggttgttaccctg
tgtatcacggtccaggagtcggaatcagcggcgtgtcatggatgtgcagcgggatcaagg
tgtgactgcagcggagtgaaaggagtcaagggtgaaagggggttaccaggactacagggt
cagctgggtgtaccggggttccccggacctgaggggcccatcggtggcaggggagagaag
ggtagtgacggaccttcagggactggaggtccaaaagggataagaggacctcccggactg
cctggattccccggaacaccaggaattccaggtctcccgggacaggatggccccccaggc
cccaagggaactgcaggctgcaacgggactaagggtgagcgaggattccctggaagtcca
ggcttccccggactggagggtcgattgggtccacctggttttccaggacaaaagggagac
ccaggtgacatcatcacaaatgaacgtttcggacagataggaggtgtaggtctgcctggc
cggcctggagttcctggtgaccaaggcccctcaggattgtccggtcctaccggccctccc
ggccccagaggttatgagggtcgtcccgggcctcctggtcttcctggtccaaagggaaac
atggggttgaacttccaaggtcccaaaggagataagggtaattcaggtctgcagggacct
cccggaccaccaggacaagttggggagcaaacaagaccctcagtgtcgagcattcagaaa
ggagaaacgggtgatcaaggtttacctggtccacctggtgatcctggttatcctggaccc
actggttcatctggtggtttgaagggagagaaaggagaaaacggagaagcaggcaaaagg
ggcaaaccggggaaagatggagacccaggtcctgctggattccctggtagtaagggagac
ccaggtgggccaggtctgccgggtcgggatggtgacaggggtgccaaaggtgaccgtgga
tatcctggacgcccaggcgtgcaggtgagcaatggtccagctacagttgggcctaaagga
gaacctgggcgtcctggggagacgggaaggaaaggagacagaggacagcctggtctctcg
ggtcctccaggtcaaccaggaaccccaggtatcggaggtggaggccagcccggtttacca
ggctacccaggagagaggggccagaagggagacgagggccagccaggcatctccatcccc
gggaacccaggacgaggtggcgcccctggtctgcagggacgtccaggacctcctgggccc
ccagggatctccaatgggggttttaactgtacaggaggggcccccgggttaccaggacaa
ataggcaatataggattccaaggagagaccggacagaaaggtgagaagggagacacctgc
gttaactgtttctccagaggcaacagtgtccctggagcacaaggcccacccggacctcct
gggttcccaggtggacctggaggaccaggggctaaaggtgacagaggattcccaggcggc
ccagggccctcaggttcttctggtttgcccggtccccagggtgcccctggtttcccagga
gagaagggtgacccaggtgagactaccgctgtgaatggggtgagcggagataagggagac
acagggtttccaggacccgctggcctgcctggtctggacggaagacctggtcgcgatgga
ggtcctggagctcctggagccaaaggatcatctggatctctattagtgaagggtgagcga
ggacctccaggtgagcccggtttgcagggtctcccaggtgacaggggtgccaccggatcc
ccaggcttcggcccgcaggggccccccggagagaagggtgtccaaggtgtctcagggaga
acgggaacacctggagcaccaggaggtaaaggggagccgggtcagacggtagcagagaag
ggcctcccaggaccccgaggacaggatggagaccccggtctacctggaaacccaggtaac
cccggcgggccaggacagcccggtttccccgggtcaccaggtcccaagggtgatcccggc
ctctctggcatcggactgccaggaccccccggagctaaaggattccctggctcacctggt
ttgccaggtggtcccggaggtccaggtagaccaggtgtggacgggttccccggacagcca
ggtgcacctggagctaagggagagccaggctttgggctgtcaggtccccagggctcacca
ggcttccccggagataaaggattacctggacccaaaggagactctggtttccctggcaac
cccggcttgccaggacgatccggctttgacggcggccctggtgccaaaggtgactctggt
atccctggtagaaccggagatcgtggccctcaaggatcaccctccatcggctctcagggt
gtccccggccctgtcggacccccaggacctattggcgctccaggatactcaggcaacaat
ggagagaagggagaccccggtcttcctggtccgggcattacagggttgccaggagacaga
ggaagtcccggtttccccggcagccccgggggagttggacctcagggtaaccccggtggc
cctggccgcgatggaatacctggcctgcctggtggtaaaggagacatgggtgtaatggga
actcctggatctctgggatcccctggcaaccccggagggcccggcttccctggacctaaa
ggtgacgatggtttcccagggcgaccaggtgggaccggcagtccaggtctgaagggagac
aggggagaccccggtctcgtaggactccccgggcccagcaactctcccccttcaatcaag
ggagccaaaggagatgcaggagaaccaggtttgcgaggtcagccgggtcagaagggtatt
tccggtctccctggagacgctggtataccaggacaggatggaagacctgggttacctgga
cctcaaggtcccaaaggagacatgggtatccctggaggatcaggctcaccaggaagccaa
ggacttaaaggcaacatgggagagatgggcttcccaggacccacaggagcgaaaggaact
ccaggtcagctaggtcggtcgggcgtacccggtagttcaggagcaccagggttccccgga
gctaaaggagacccaggttcccccggatttggtgccacaggagctacaggtcccaagggt
gagcccggtcggtcgggattccccggacaaaatggagtgaaaggaactcccggaacacca
gggcttccagggtttcccggcggccccggagccaaaggcgaccccggcctcccaggattc
caaggttctcccggtattcccgggcctaagggtctagacggtacccctggtaaccccggt
ctcgccggaggccccgggcgaccgggagagaatggccgtgccggatcacctgggttccca
ggcgacaagggtcaggcaggtcgcgacggaatccctggaccagcgggggtcaaaggagac
caaggtctttctggtttcggcggcccaggttctcctggtctcccagggtcaccaggtgct
aagggagattttggcgcccctggtctcccaggtaaccctgggttccctggtcagaaggga
gagatgggcttccccggccaacctgggtcccccgggagcatcgggccccctggtgcccca
ggtgtggccctccaggggcccaagggtaacagtggatcccccggcccccctggaagagga
ggtcctcctggccccgagggtcctcgtggccttgggggcagcggagggaccaaaggtgag
aagggaatccctggatcttccggatcccctggtttccccggagcgaagggagaattggga
tcgcccggattcccaggtattcctggccctcctggtggcagcgggctgaagggagacatt
ggacttcccggcgttcccggattcccaggactaaagggagaatctggaaaccctggatca
tctggtctgcctggagatcctggagatcctggtcctgctggaatccaaggcgacccaggt
gtcgctgcgacccccatcatgctgaagggagaacgtggcccccctggcccttcaggtctg
ccaggcaaccgtggctcccaaggaccccccggacaggagggacgctcaggtcagcccggt
caaccaggggaccccggtcctgaaggacccccaggattcagtggagccttcggccgcaag
ggagactctggacccgccggacagccaggtcagcgtgggtacccaggtcccactggttca
gatggtcagcagggccccccaggtaaccccggctcagcctctgtgacccatggcttcctg
atctcgagacacagccaggctgaatatgtccctacctgccccgaagggaccagcctcatc
tacgacgggttctctctgctctacgtacagggcaacgagagggcacacggacaggaccta
ggtactgctggtagttgcctgcgtcggttcagcaccatgccattcatgttctgtaacatc
aacaacgtgtgtaacttcgcctcccgtaacgactactcctattggctgtctacacccatg
cccatgcccatgagtatggcccccatcaccggagaagacatcaaacctttcatcagcagg
tgtgcagtgtgtgaggcccctgccatggtgatcgctgtacacagtcaaaccattcagatc
cccacctgtcccagctactgggaaccactatggatcggatactccttcatgatgcacacc
agtgcaggtgctgagggctctggtcaggctctggcctctcctggctcctgtctcgaggag
ttccggagctctccctttatcgagtgtcacggccgagggacctgcaactactatggcaac
acatacagcttctggctggccactgtcgaccaatcagaaatgttcaggaagccacagtca
gagacgctgaaggcaggtaacctatcgacgcgcattagccgctgtgtggtctgtatgaag
aggacgtaa
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