Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139415914
Help
Entry
139415914 CDS
T10872
Name
(RefSeq) transcription factor Sox-19b-like
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139415914
Transcription factors [BR:
ocla03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
139415914
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
SOXp
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
139415914
NCBI-ProteinID:
XP_071020180
LinkDB
All DBs
Position
9:complement(13611113..13616509)
Genome browser
AA seq
300 aa
AA seq
DB search
MYSMMEHELKPSGQQQQQQHHHQTAQGMSPVTGNIGNSHLGSKSVCPPGGDPMDKVKRPM
NAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLTDAEKRPFIDEAKRLRAVHMKDY
PDYKYKPRRKTKPLLKKDNPMAKYPLSAGNLLAAAAAQGQGGSARMESYGWGPAGGYAGM
QNEALGYTQQLHRYDLSALQYPQAMTAAQTYMNGANTYSPMSYSSSTQQPSPVMSMVKPE
PVSHSPTGGPNHHRGPLQGDLRDMISMYIPGGDASDPAAQRGGYSVQQHYLSGTVPLSHI
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatggaacacgagctgaagccttctgggcaacaacaacagcagcagcac
caccaccaaacggcccagggcatgtccccggtcactggaaacattggcaactctcacctg
gggtccaaatccgtgtgccctccgggcggggacccaatggacaaggtcaaaaggcccatg
aatgccttcatggtgtggtccaggggccagcgccgcaagatggcccaggagaaccccaag
atgcacaattctgagatcagcaagcggcttggcgcggagtggaagctgctgaccgacgcc
gagaagcggccgttcatcgacgaagccaagcgcctcagggcagtgcacatgaaggattat
cccgactacaagtacaagccacggcgcaagaccaagcccctgctcaagaaggacaacccg
atggcgaagtaccctctctccgccgggaacctgctggctgcagcggccgcgcagggccaa
ggtgggagcgccagaatggagagctacgggtggggcccggcgggaggttacgctgggatg
cagaacgaggccctcggctacactcagcagctgcaccgctatgacctgtccgccctccag
tatccccaggccatgactgcagcacagacgtatatgaatggagccaacacctacagcccc
atgtcctacagcagcagcacccagcagcccagcccggtcatgtccatggtgaagccagag
ccagtatcacactccccgactggtggacctaaccaccaccgcgggcctctccaaggggac
ctgagagatatgatcagtatgtacatccccgggggggacgccagtgacccggccgcccag
agaggaggctacagtgtccagcaacactatctcagtgggaccgttcccctcagtcatatc
tag
DBGET
integrated database retrieval system
