Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139415930
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Entry
139415930 CDS
T10872
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase CYLD
KO
K08601
ubiquitin carboxyl-terminal hydrolase CYLD [EC:
3.4.19.12
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04217
Necroptosis
ocla04622
RIG-I-like receptor signaling pathway
ocla04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
139415930
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
139415930
04625 C-type lectin receptor signaling pathway
139415930
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ocla01002
]
139415930
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139415930
Enzymes [BR:
ocla01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
139415930
Peptidases and inhibitors [BR:
ocla01002
]
Cysteine peptidases
Family C67
139415930
Ubiquitin system [BR:
ocla04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
139415930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAP_GLY
UCH
Motif
Other DBs
NCBI-GeneID:
139415930
NCBI-ProteinID:
XP_071020211
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All DBs
Position
9:14241534..14257771
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AA seq
936 aa
AA seq
DB search
MSGAQDHKRRQPPKMYLVVSNLKIQDQLEGTIRLLRGNLCQEQEGGRSRGDQLWVKVLDY
GCMVKIDKQLLIEVPTDLTGLLEPVSDPESRLNLLINPKQLYRLAALPLGTPLYVQMGQP
GELAEAELRYRGPLTRGSTAVLFGVQLKDSAVGRGNSNGSYKGHQLFTCPEASALFLPAN
QIRLRRWSRANDDHHNNALPPQPQPPIGNIIARTAESSPSLAPVPVLARNPSSPPPFQVG
HRVCFPLEDTVHGGEVRFCGALPGRTSTGVFVGILLDNAVGNWDGSYKGEKLCSISSSLY
GCLLPISKVSPEPRSRRHTPPLQNPKPVLKPTQPPAPVSSPASTPKIALMPPQLLSAKLA
LKPPPLPSPKPFMKTHPLPPTPPTIKPQTLPSPTTNQPQLLNGSPGPLSPGRGDGLDAEE
NGDAGLEVELEVGSMVEVNDPPLFGVIRWIGRIIGVSQLVSGIELDQELTAGTDGSYLGE
RHFRCPANKGLFVKLRNCRRDSRFPAPETPVNQVERCNSIAFAEWGSERVEEHTPPIQGD
EARDMYQGWKRGIQGHLNSCYLDASLFSLFSCCSSVDWVLLWPSNPSDGPHCSQAQDLLR
CEIVNPLRRFGYVCASKTMALRRLLEAESSDTGFTNQEKDPEEFLNKLFQLLRVEPLLKI
RSVTQKQQPQECHLYQLFPPSVPLSPSSPVPLSPSLCPIPLSSPAVLMRVASVQTLLETS
FLHAGLKFAEAPSCLPLLMPRFGKDFKMFDAILPSLTIDITDLLDDTLRQCSICQAVAEW
ECLECYDDLDITPGRLKQYCHTCNTQVHIHKKRQSHSPCQVGVAGGPWTGPLHGTRQRLA
LFAVTCIETSHYVSFVKHGPRPNDWLFFDSMADREGGENGFNIPQVRACPEVGRYLSLSA
EELGRLDPASLRESARRLLCDSYMCLYHSPELSLYK
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgtctggggcccaggaccacaagagacggcaacccccaaagatgtacttggtggtctcc
aacctaaagattcaggaccagttggaaggtaccatccgactgctacgcgggaacctctgt
caggagcaagaggggggaaggagcaggggcgaccaactgtgggtaaaggtgttagactat
ggttgtatggtaaagattgacaaacagctgcttatagaagtccccaccgacctgaccggc
ctattggagcctgtatctgatccagagtcccgcctcaatttgctcattaaccccaagcaa
ctttaccgattggctgccttgcccctaggcacccccctctatgtccagatgggccaacca
ggagagttggcggaggcggagctgaggtatcgaggaccgctgaccagaggaagtactgct
gtgttgtttggggtgcagctgaaggactcagcagtgggtagaggcaacagtaatggttct
tacaaaggccaccagctcttcacctgtcccgaagcctccgccctcttcctaccggccaat
cagattaggctacgacgctggtcccgtgccaatgacgaccatcacaacaacgctcttcct
cctcagcctcaaccccccattggtaacatcattgctagaacggccgaatcgtctcccagc
ctggccccagtcccagtcctggctcgaaaccccagctccccaccacccttccaggtgggc
cacagggtgtgcttccctctggaggatactgtccatgggggagaggtgaggttctgtggg
gccctgcctggacggacctccactggggtgttcgtaggaatcctgctggacaatgcggtt
ggtaactgggatggctcatataaaggagagaagttgtgctccatctcctcttctctgtat
ggttgcctgctacccatctccaaggtgtcccctgaaccaaggtcacgccgccacactccc
cccctccagaaccccaaaccggtcctcaaacccacccaaccacctgctcctgtatcctca
cctgcctccaccccaaagatcgctctgatgcccccccaactcctctcagccaaactggcc
ttaaaacctccacccctccccagccccaaacctttcatgaaaactcacccccttccccca
acccctcccaccatcaaaccacaaaccctgccctccccgaccaccaaccaaccacagctc
ttgaacggttcgcccggtcccctctctccgggtcgaggtgacggattggacgctgaggag
aacggagacgcgggattggaggttgagttggaggtggggtccatggtggaggtgaatgac
ccacccctttttggagtgattcgttggattggacgaatcattggagtttcacaactggtg
tcaggaattgagctggaccaggaactgaccgctggaacagacggcagttaccttggcgaa
cgccacttccgttgccctgccaacaaggggctgttcgtcaaactccggaactgcaggcgg
gattccagattccctgcccctgagacaccggtcaatcaggtggagcgctgcaactccata
gcgtttgccgagtggggcagtgagcgcgtagaggagcacacccctccaatccagggagac
gaggccagagatatgtaccagggctggaagagaggcatccaaggccacctcaactcctgc
tacctggacgcctcactattcagtctgttttcgtgctgcagttcagtagactgggtgttg
ctgtggccctcgaacccctcagacggcccccactgcagccaagcccaggacctgcttcgc
tgtgagatagtcaacccgctacgcaggtttggctatgtatgtgccagtaaaaccatggcc
ctgagaagactactggaggctgagagtagtgacacaggcttcacaaaccaggagaaagac
ccagaagagttcctcaacaagcttttccagctcctccgggttgaacctcttctgaagatc
aggtcagtgacacagaagcagcagcctcaggagtgtcacctctaccagctcttccctcca
tccgttcccctctctccctcttcccctgtccctctgtctccgtccctctgtcccatccct
ctctcctcccctgcagtactcatgagggtggccagtgttcagactctgttagagacatct
tttctccacgcgggactaaagtttgctgaggccccttcctgcctccccctcctcatgcct
aggtttgggaaggacttcaagatgtttgacgccatcttgccttcactcaccatcgacatt
acagacctgctggatgacactctcagacagtgcagtatttgccaggcagtagcagaatgg
gagtgtctagagtgttatgacgacttggacatcacacctggtcgtctcaaacagtactgc
cacacctgcaacactcaggtgcacatccacaagaagcgccagtcccacagtccgtgtcag
gtgggtgtggctgggggtccatggaccggcccactgcatggaactcgtcagcgattggct
ctctttgctgtgacgtgcatcgagaccagccactacgtgagcttcgtcaagcatggaccc
cgccccaacgactggctattctttgacagtatggccgacagggaaggcggggagaacggt
ttcaacattccccaggtgagggcgtgtccagaggtgggccgctacctcagcctatcggcg
gaggagctgggcaggctagaccccgcctccttgagagagtccgctcgccggctgctgtgt
gactcctacatgtgtctctaccacagccccgagctcagcctgtacaagtaa
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