Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139415935
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Entry
139415935 CDS
T10872
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 5
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139415935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139415935
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
139415935
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Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
Motif
Other DBs
NCBI-GeneID:
139415935
NCBI-ProteinID:
XP_071020227
LinkDB
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Position
1:26674817..26680243
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AA seq
229 aa
AA seq
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MSVVPPNRPSTGWPRRGLNQFENKYISPPSKPVTLERAINLYPLTNYTFGTKEPLYEKDS
SVAARFQRMREEFEKVGMRRAVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNAGEDEV
DGLKRLMTEILGRQDGVKQDWVIDDSIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQ
LQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN
NT seq
690 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttgtacctcccaaccgaccttcaaccggttggccacgccgtggactgaaccag
ttcgaaaacaaatacatcagcccgccttccaaacctgtcacgctggagagagccatcaac
ttatatcccctcacgaattacacgtttggcacaaaggaacctctctacgagaaggatagc
tcggtagcggctcggttccagaggatgcgcgaggagttcgaaaaagtaggcatgaggcgg
gcagtggagggtgttctgatcgtacacgagcacaggctaccacacgttctactgctgcag
ttggggacaacctttttcaaacttcctggtggagaattgaatgcaggggaggacgaagtg
gatggactgaagcgattgatgacagagatcctggggcgtcaggacggagtgaagcaggac
tgggtgatcgatgactctattggaaactggtggagacccaactttgagcccccacagtac
ccctacatcccagcacacattaccaaacccaaagagcacaagaagctctttttggttcag
ttgcaggaaaaagcactgtttgcagtgcccaagaactataagctggtggctgcccctctc
tttgagctgtatgacaatgccccaggctatgggccaatcatatccagtctcccacaactg
ctgagtaggttcaacttcatatacaattaa
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