Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416021
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Entry
139416021 CDS
T10872
Name
(RefSeq) low-density lipoprotein receptor-related protein 10
KO
K20050
low-density lipoprotein receptor-related protein 3/10/12
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139416021
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
139416021
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
CUB
Motif
Other DBs
NCBI-GeneID:
139416021
NCBI-ProteinID:
XP_071020359
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All DBs
Position
9:17937856..17945831
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AA seq
816 aa
AA seq
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MTASFNLCVLNVLFVTAYSSLELASSTAHCGQSPQVLEAPRGEIRSSVHHSWSYRPRPFN
CSWIIKAHVGEPVILSFSQFSTRCKKEWVSVTSSTGKPITFCGSDLPKPMELMGGNITVT
HHFLPHLFPVSAFCLGYVRDSGECPVVDFECLGGRCLPLSWRCNGQTECLGEGMGLGTDE
QECDGEIEILDPEHDKVVVTTTTPESYIEREREGETGREKSGGRDWETAPVEVEKEVEED
GDYTKVKEPDNPMEDYWEFLPRQLPSPQPHRAHPGPGVTQAPIEWPCGGLLQTFYGTFAP
PSIKGPPLFCVWTLDPQDSRPLKLDLQLLELGPGDTVTITNRQQGTGELIKTITSESSYK
AIQVESRTGLLSLTYHTLPGSEGLGFNATYRVGGYCPPWEGKCGGAAGGCYTQEQKCDGR
WDCPETGHDEAGCRGCPRDQFACGGVGQRAVLAGHNFIGRPVCFPAKERCNYQLYCADGS
DEKDCTICQPGTFHCDSNRCVFESWSCDGQVDCKDGTDEMNCTMTLPRKVITAATVGSLV
CGLLLVIAMGCTCKLYSLRTREYSMFAPISRQEAELIQQQAPPSYGQLIAQGIIPPVEDF
PTENPNESSSLSLRGFLQLLRQDTSNSPRRRRRPRFIRRAVRRMRRWGLIPRSASRPSQP
SSSAPQLTEAPSTGVDPSQSTPATTSLAVEAVNLPLPQKLGLLPQTVQYQPPPPPHFLPP
PTLLPPPIVSTPDTPQSPPVAVPPTPSSPSLASLFHSLGRTISRFRSSPSSSSPTNSLPL
STSPSFSSSLEDEVLLIPLSEDTTPEDDVPLLTLDP
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgactgcctctttcaacctttgtgtccttaacgttttgtttgtaactgcctacagcagc
ctggagctggcctccagtactgctcattgtggacaatctccccaagtcctggaagccccg
aggggagagatcagaagctccgtccaccacagctggtcctaccgcccacggccgttcaac
tgtagttggattatcaaggcacacgtaggagagcccgttatcctcagtttctcccagttt
tctacacgctgtaagaaggaatgggtctcggtgacatcatcaactggcaagcccattacc
ttttgtggttccgacctgccaaagcccatggagttgatgggggggaacattacagtgacg
caccacttcctaccacacttattccccgtctctgcgttctgcctgggctacgtcagagac
tctggtgaatgtccggtggtggactttgagtgtttgggcgggcgctgcctgcccctgtcc
tggcgctgtaacggacagacagagtgtctgggtgaagggatggggctgggaacagacgag
caggaatgtgacggagagatcgagatcctggatcctgagcacgacaaagtagtggtaacc
accaccacaccagagtcctacatagagagagagagggagggggagacaggaagagagaag
agcggggggagggattgggaaacggcaccggttgaggtggagaaggaagtagaggaggat
ggggactacaccaaggtaaaggagccagataatcctatggaggactactgggagttcctg
cctcgtcaactccccagcccccagcctcacagagcccaccccggtcccggtgtgacccag
gcccccatcgagtggccgtgtggcggcctcctccaaaccttctatgggacgttcgcccct
ccttccatcaagggcccccctctgttctgtgtgtggaccctggacccccaggactccagg
cctctaaagctggacctgcagctgctggaactggggcctggagacacggtcactatcacc
aacagacagcagggcaccggggaactcatcaaaactatcaccagcgagtccagctacaag
gccatccaggttgagtcccggaccggccttctctccctgacctatcacacgcttcccggc
tcggaggggctgggcttcaacgccacctaccgtgtcgggggctactgccccccctgggag
ggtaaatgtgggggtgcggcggggggctgctacacccaggaacagaagtgtgacgggcgc
tgggactgtcctgagacggggcatgatgaggcgggatgcagggggtgtcccagggaccag
tttgcttgcggaggggtggggcagcgggcggtgctggcgggtcataacttcatcgggcgt
ccggtgtgcttccctgccaaggagaggtgtaactaccagctgtactgtgctgacgggagc
gacgaaaaagactgtaccatatgtcaacctgggaccttccactgcgacagcaacaggtgt
gtgtttgagagctggagttgtgacggccaggtggactgtaaggacgggacagacgagatg
aactgcaccatgaccctgcctcgaaaggtcatcaccgcggcaaccgtgggcagcctggtc
tgtgggctgctgctggtcatcgctatgggctgcacctgcaagctctactcactgcggacc
cgagaatacagtatgtttgccccaatcagccgccaggaggcggagctaatccagcagcag
gcccctccctcctatggtcaattgatcgcccagggcatcatccctccagtggaggacttc
cccacggagaaccccaatgagtcttcctctctttctctgagaggttttctccagcttctc
agacaggatacttctaactctccacgacgccgacgccgtccccgattcatccgccgggct
gtccgtcgcatgcggagatggggcctaatccccagatccgcctccaggccctcccagcca
tccagctctgccccccagctgacagaggccccctccactggtgtggatcccagtcaatca
actcccgccaccacctcattggctgtggaagccgtcaatctgccattgccacagaaacta
ggcttgctcccacagacagtgcagtaccagccaccaccacccccccacttccttcctcca
cccactttactccctccacccattgtctctactccagacaccccccagagccctccagtg
gctgtcccccccacccccagcagcccctccctagcctctctcttccactctttggggcgc
actatctctcgcttccgctcctccccttcctcctcctcccccaccaactcactgcccctc
tccacatccccctctttctcttcctctttggaggacgaggtgctacttatccccctctcc
gaggacacaaccccagaggacgacgtgcccctgcttacactcgacccctga
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