Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416035
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Entry
139416035 CDS
T10872
Name
(RefSeq) GRB10-interacting GYF protein 1-like isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139416035
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
139416035
Surveillance factors
Other surveillance factors
139416035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
GYF_2
TRI4_N
Motif
Other DBs
NCBI-GeneID:
139416035
NCBI-ProteinID:
XP_071020374
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All DBs
Position
9:complement(19133963..19161713)
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AA seq
1061 aa
AA seq
DB search
MTAETLNFGPEWLRALSSGGSVTSPPPSPAMPKYKLAEYRYGREEMLALYIKENKAPEDM
QDKEFASILQDEPMQPLALEPLTEEEQRNFSMSVNSVAVLRLMGKGGGVAPAGVARGRGT
TRGGGRGRGRGESGGFYQRSIEEGEVGFGRGAREIHRSQSWDDRGERRFEKPVRAREGVR
VGFEEATGVPVPGVPRKDYTRSDSENWRSLREEQEEDEEEGADPGGSWRLAGARRLDDGG
PKSAGWREHDGQVEGRRRKFEFDFGGGRRRAGSEGLEDDRDGLPEWCTDEEGEMGTFDAS
GAFLPISKGGKEDELDFQGIEEEEEGGESLSDMKRIMNGGQRVDVKESAGTSPSSSSSSS
PPGPLSAPPALALNPPMPQLSLTVAELEASQMANSHPVPVPVLVKASKMPSEVLEGSPAG
SSTTQQSPSTTSSLPSPPPSSSAANHLSLPPGGDTEDDEGMKHLQQEAEKMVASLQDTSL
EEESFTQTLQESRNTASALPLSHDAAMKWFYKDPQAEIQGPFTTLEMCEWFQAGYFSMSL
LVKRGCDEGFQPLGDVIKMWGRVPFAPGPSPPPLLVRPPPPRPQPLPPRGSAGSMDQDRL
KKQQEQAAAVLYQQLQQQQQLFQLISRCGEQGILPAVNRSMSVPDTGSMWDMHTSASQQS
GGEASLWDLTMNSSTQGPTLEQLQKLQQERREAELRAKREEEEQRKRREEKRRQQEEQKR
REEEEIFRRKQCRQQQELIMKLLQQAPQQGSGSGVGSGWGTGGLNKSGAKGLSLLDMQEA
ERLLKQQQRAQQQQRERHQGLSMGGSSMGQWGDGGAVTGSLWGGGGGMEGKAGGGMGLWD
EAVKNQTRSSSMQGLKNSRSSPSLSEQYMLSCRKQRTDEEDKLLKLLQGIKTPQDGFTTW
CEQMLHALNTQANNTSSPLDVSTIVAYLKEVESPYEVHDFIRSYLGDTMEAKEFAKHFLE
RRAKQKQNLQRQQQQLSKEVAGLAMSNFPLPDSMRGVSPSTLQSMFQAAQMGKGGLYDTQ
GAMKKKKQPVVLHSDPSILGYSYHNAGERLSLNEMEMVEDY
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgactgctgagacacttaacttcggccccgaatggctccgtgcactatccagtgggggg
agtgtgacgtccccccctccttcccccgccatgccaaagtacaagctggccgagtatcgc
tacggccgagaggagatgttagcactttatatcaaagagaacaaggccccggaggacatg
caggataaggagtttgcgtctattctgcaagatgagcccatgcagccgctggcactggag
cctctcactgaggaggagcagaggaacttctcaatgtctgtgaacagtgtggctgtgctg
aggctcatgggtaaaggagggggagttgccccagcgggcgtggcccgaggcagaggcacc
acgcgaggaggtggcagagggcgaggtcgaggcgagagtggaggattctaccaaagaagt
attgaggagggagaggtaggcttcggccgtggagccagagagatccaccgcagccagagc
tgggacgacaggggcgagaggcgttttgagaagcctgtgcgtgccagggagggggtacgt
gttggcttcgaggaggcgactggtgtccctgtgcctggggtaccgaggaaggactacacg
cggtcggacagtgagaactggcgtagcctccgagaggagcaggaggaggacgaggaggag
ggggccgaccccgggggcagctggagactggccggagcacggagattagatgatggcggt
ccaaagtcagcaggctggcgggagcacgacggtcaggttgaggggcgtcgcaggaagttt
gagtttgacttcggcgggggtcgcaggcgggccggcagcgaggggttagaggacgacaga
gacggactgcctgagtggtgcactgatgaagaaggagagatgggcaccttcgacgcttcc
ggagccttcctacccatatccaagggaggaaaggaggatgaattggacttccagggaata
gaagaggaggaagaagggggggagagtctttctgacatgaagaggatcatgaatggagga
cagagagtcgatgtaaaggaatccgctggtaccagtccctcttcctcctcctcctcctct
ccccctggccccctctctgcccctccagctctggctctcaatccccccatgccccagctg
tccctcaccgtggctgagctggaggcctctcagatggccaacagccaccctgtccctgtt
cctgtccttgtcaaggcgagcaagatgccaagtgaagttctcgagggctctccagcaggg
tcctccaccacccaacagagccccagcaccacctccagtctgccttcaccccctccctcc
tcctctgctgctaaccatctctccctgccaccggggggtgacaccgaggacgacgagggc
atgaagcacctgcaacaggaggcagagaagatggtggcgtccctgcaggacacgtctctg
gaggaggagagtttcactcagacactgcaggagagcagaaacacagcctccgccctgccc
ctctcccacgacgctgccatgaagtggttctataaggacccccaggcagagatccagggt
ccattcaccactctggagatgtgcgagtggttccaggcgggctacttctccatgtctctg
ctggtgaagaggggctgtgacgagggcttccagccgctgggtgacgtcatcaagatgtgg
ggacgcgtgcctttcgcccccgggccctccccgccgcccctgctggtgagacctccaccg
ccacgccctcagcctctaccgccccgggggtctgctggtagcatggatcaggaccgtctg
aagaagcagcaggagcaggcagcagcagttctctatcaacagctccagcagcagcagcag
ctattccagctcatcagcaggtgcggagagcagggtattttgcctgcggtgaacaggtcg
atgtcagtgccagatacagggtccatgtgggacatgcatacctcagcttcacagcaatca
ggcggtgaagccagtttatgggacttaacaatgaattcttcaactcagggtccaactctc
gaacagcttcagaagctccagcaggagaggagagaagctgaactcagggcaaagcgcgag
gaggaggaacagcgcaagaggagggaagagaagaggaggcagcaggaggagcagaagagg
agggaggaggaggagatcttcagacgcaaacagtgtcgccagcagcaggagctgatcatg
aagctgctccagcaggccccccagcagggctcaggctccggggtggggtctggctggggc
actgggggtctcaacaagtcaggggccaagggcctcagtctgcttgacatgcaggaggca
gagaggcttcttaaacagcagcagagagcccagcagcagcagagagaacgtcaccaaggc
ctgtcaatggggggttcctccatgggtcagtggggggacggaggtgctgtcacgggcagc
ctgtggggaggcggaggggggatggagggtaaggctgggggcggcatgggtctgtgggac
gaggcagtgaagaaccagaccagaagtagcagcatgcagggactgaagaacagccgcagc
agcccctcactcagtgagcagtatatgctgagctgtaggaagcagcgtacggatgaggag
gacaagctgctgaagctgctgcagggcatcaagacgcctcaggacgggttcaccacctgg
tgtgaacagatgctgcatgccctcaacacccaagccaacaacacctcctctccactggac
gtgtccaccatcgtggcgtacctgaaggaggtggagtctccctacgaggtccatgacttt
atccgctcctacctgggagacaccatggaagccaaagagttcgccaagcacttcctggag
cgccgtgccaaacagaaacagaacctgcagcggcagcagcagcagctatcaaaggaagta
gcagggctggccatgagcaacttccctctgccggactccatgcggggagtgagccccagc
accctgcagtccatgttccaggccgcccagatggggaagggagggctgtacgacacccag
ggggccatgaagaagaagaaacagcctgtggtgctgcactctgaccccagcatcttaggg
tactcataccacaacgcgggcgagcgtctgagcctgaatgagatggagatggtggaagat
tactga
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