Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416093
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Entry
139416093 CDS
T10872
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla02010
ABC transporters
ocla04148
Efferocytosis
Brite
Transporters [BR:
ocla02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
139416093
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
DUF4162
AAA_23
MukB
Motif
Other DBs
NCBI-GeneID:
139416093
NCBI-ProteinID:
XP_071020465
LinkDB
All DBs
Position
9:complement(21658947..21899638)
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AA seq
2254 aa
AA seq
DB search
MGLLTQLGLLLWKNFTLRKRQKVRLVVELLWPLFLFFILVWVRSTSQPIYQGECHYPNKA
MPSAGVLPWLQGMMCNIDNPCVNHSTPGEAPGQVNNFNDSIIAGMLIELQSLLANRSILT
KIQTLSDDVDQWVLILPTSNREKGQPIPLRSILNDNEMFTTYLRENLSLSSTVADGLITS
NIRLNEMMGISRQDDLRITLCSGTALDRYVEFTSAFDKEAFQKVSCSLTAQQLRQTREVF
LQNLDPRKMLTNLPSALDLAPSETFGLVRKTTEDALTVIDEMNKLQNSMLFKAADRLDFR
ADAFGSLNILLCGKVSNSNSTKTTMNFPAFGAMRNDTENKARSSNSSAFCKVLIDTLEGT
PGLRIVWRTFRPLIQGKILYTPDTPATRLMVKEANSTFNALAMLKELLEAWEDFEPRGWN
YFQNGPQVSALRAFLDNPVFAAALNHGLEGTRWTEELLANFLYNGPPEDRPAGMPPNDWR
DVFNTTSQILDLLKKFIGCLDLDKFEAVDSEGHLVARALELLENDTYWAGIVFEDLDPAA
SHPPPYVKYKIRLDIDEGESTNKIKERGWSPGARDSFNNLRYIWGGFAYLQDMMDHGIIR
VHTNKSQPLGVFAQQMPYPCYVDDVFLASIGTMLPMYLVLAFMYTVCMTIKGLVLEKELR
LKEVQRAVGVQNGAIWFAWFTENFVLLMVPCAFISVMVKYGKVLQYSDPSVIFVFLLVFC
VATIMECFFISVFFSKANLAAACGGLIYFVLYLPHLLCYAWRDVMGFQVKIAVSLLSCVA
FGYGCENFAKYEEQGIGIQWSNIAQNPEDGDQYSFIVSIIMMLVDSLIYWLLTWYIENVF
PGQYGIAKPWYFPFTASYWCGTSPAPNDDPSQFKDPIEYTGYLEKPPLNMKAGVSIRNLV
KIYKTGKKLAVDGLTVDFFENHITSFLGHNGAGKTTTMSILTGLFAPTSGTALINGYDIR
TDMDTIRKHLGMCPQHNVLFNDLTVEEHIYFYSRLKGRSREEVKTEIDQMIEDVGLPHKR
KEFAKNLSGGMQRKLSVAIAFVGGSNIVILDEPTAGVDPYARRGIWELLLKYKQGRTIIL
STHHMDEADILGDRIAIISHGKMCCYGSSLFLKKYFGSGYYLTLVKAGDGQMTNQCTGVE
QCQVKEETGESLRRTSLVEGIARQNWSNSEPTDVSKVVCRHVPEAVFLESIGQEITYILP
YGGAKDGTFALLFKELDLKMADIGVTNYGISDTTLEEIFLKVAEDTGVDAEIPAINAALV
RDKTRSSRESKRQRQSLTKVGDTADEMPGKSAEDEMKVKFTSRVEDVERVANVNGKGSSV
ITGWELIRRQFLALFIKRFHHARRSRKGLIAQVILPAVFVCLSLIFSVIVPPFAEYPNLE
LQPWMYGLPQTTFYSNDGPPNNTEVARVADSLVNNPGFGTRCMANNPIPNLPCVPNDSKW
FTPTVDPSISNIFVNGNWSMANPSPNCQCSTPQKTTMLPDCPPGAGGLPPPQRTQNTTDT
LQDMTGRNMTDFLLKTYKEAGRKRYGGISVGGVNSQVRMTEPEIEAVIRDLRSLLNSSQD
NTTDQMLLNTEMLLKELGTRDNVKVWFYNQAWHGIVSFLNVANNAILRGNLPPGHDPREY
GISSSSHPLNLTKAQLSYQAMAATSTDVVVSICVIFAMSFIPASFVLFLIQERVSKAKHL
QFVSGVNPTVYWVANFAWDICNYIVPCLIVIVIFLCFQQKAYVSLPNLPALILLLMMYGW
SITPMMYPASFIFNVPSTAYVVLTCINLFIGINGSVATFVMELFADDNISKINGIVKQVL
LIFPHFCLGRGLIDMGKNQAMATLYDSFGEDRYQDPLSWDMVGKNLCAMAIQGAVMFTIT
LLIQYKFCCKPRLISGESFSKEDEDVDVAQERARIHNGGSEKDLLRICDLSKVYSGKKIP
AVDRVCVGVPAAECFGLLGINGAGKTTTFKMLTGDISISGGEAFLNGYSIRTEMRDVHQN
MGYCPQFDALNDLLTGREHLEFYARLRGVPEKEVPMVAEWGIQKLGLVKYSNKSAGTYSG
GNKRKLSTAMALIGCPPVVFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSMEEC
EALCTRMAIMVNGQFKCLGSIQHLKSRFGEGYTVIVRVGGSPPALGPVEEFVHESFPGSI
LKEKHHNTLQYQLPHSEGALASIFSHFTTHQQRLGVEDYSVSQTTLDQVFVNFARYQQEE
DNQALQAYDNKVDVSDEMPMETRISTDSTVPESV
NT seq
6765 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctgacacaactcggtctgctcctgtggaagaacttcactcttcggaagaga
caaaaggtgcgtctggtggtggagctgttgtggcctctctttctgttcttcatcctggtc
tgggtgagatcaaccagccaacccatttaccagggcgaatgtcattatccaaataaagcc
atgccttccgccggggtgctgccttggcttcaaggcatgatgtgtaacatagacaaccca
tgtgtaaaccattccacgccaggagaagcaccgggacaagtcaacaacttcaacgattcc
ataattgctgggatgttgatcgagttacagtcacttctggcgaacagatccatcttaacc
aagatccagacgctttccgatgatgtggaccagtgggttttgattctaccgacatctaac
cgtgaaaaaggtcagcccattcctctgagaagtatcctgaatgacaatgaaatgttcacc
acatatctgagggaaaacttgtccctgtcatcgacggtagccgacggtctgattacctca
aatattcgcctgaatgagatgatgggcatttcaaggcaagacgatctgaggatcaccctt
tgcagtggaacagctcttgatagatacgtggaattcaccagcgcctttgacaaggaggcc
tttcagaaagtcagctgctccctcacagcacagcagctgagacaaaccagagaagttttc
ctacaaaacctggatccaaggaaaatgctcaccaatctaccttcagctttggatttggct
ccgtccgagacctttggattagtgagaaaaactacagaggatgccttaaccgtgattgat
gagatgaacaagttgcagaactcaatgttgttcaaggccgctgataggctggatttcaga
gcagatgcatttggcagtctgaacatcctactttgtggtaaagtatcaaactccaactcc
acaaagaccaccatgaatttccctgcttttggagcgatgaggaatgacacagaaaacaag
gccaggagcagcaattccagtgccttctgcaaagtactgattgacactcttgagggaact
cctggcctacgtattgtttggaggacatttcggcccctaatccaagggaagatcctctac
acccctgacacacctgcaactagactaatggtgaaagaggcaaatagtactttcaacgca
ttggccatgttgaaagagttgttggaagcttgggaggattttgaaccacgtggttggaac
tactttcaaaatggcccccaagtcagtgcactgcgggcctttctggataacccggtgttt
gcagccgcactcaaccacgggctcgaaggcacaagatggacggaagaactgctcgccaac
ttcctgtacaacgggccccctgaggaccgccccgcgggcatgccgccgaatgactggcgc
gacgtgttcaacaccaccagccaaatcctggacctcctgaagaagttcattgggtgcctg
gacctggataagtttgaggctgttgacagtgagggacatctcgtggctagagccttggag
cttctagaaaacgatacgtactgggctggtatagttttcgaagacctcgaccctgccgcc
agccacccccctccttacgtcaagtacaagatccgcttggacatcgatgagggggagagt
accaataagattaaagaaaggggatggtctcccggggcccgtgactccttcaacaacctg
cgctatatatggggaggcttcgcctatctgcaggacatgatggaccacggcattatacgg
gtgcacacgaacaaatcacagccgctcggcgtgtttgcccagcaaatgccgtatccctgc
tacgtggacgacgtcttcctcgcgagtatcggaaccatgcttcccatgtacctggtgctg
gccttcatgtacaccgtctgcatgaccatcaagggcctcgtcctggagaaggagctcagg
ctcaaggaggttcagcgggccgttggagttcagaacggtgccatttggttcgcgtggttc
accgagaactttgtcctgctcatggtcccatgcgcattcataagtgtcatggttaagtat
gggaaggtgctgcagtacagcgacccctcagtgatcttcgtcttcctgctggtcttctgc
gtggccaccattatggagtgtttcttcatcagcgtcttcttctccaaggccaacctggcg
gcggcgtgcggaggcctcatctacttcgtcctctacctgccgcacctcctctgctatgcc
tggagggacgtcatggggttccaggtcaaaatcgctgtgagtttgctgtcgtgcgtggcc
ttcgggtatggctgtgagaactttgccaagtatgaggagcagggcatcggtattcagtgg
agtaacatcgcccaaaatcctgaagacggagaccagtatagcttcatcgtgtccatcatc
atgatgctagtcgactccctcatctactggctgctcacgtggtacatcgagaacgtcttc
ccaggccagtatggaatagcaaagccgtggtacttcccattcaccgcctcctattggtgt
gggacttcaccggcgcccaatgatgaccccagtcagttcaaggaccccattgaatacacc
ggttatttggaaaagccaccactcaatatgaaggcaggggtctcaatcaggaaccttgta
aagatctataaaactgggaaaaagcttgctgtggatggactaactgtggacttcttcgag
aatcacatcacctctttccttggtcacaatggggcaggaaaaacaaccaccatgtcgatc
ctgacaggactcttcgctccgacgtcggggaccgctctaataaacggttatgatatccgc
acagacatggacaccattagaaagcatctgggaatgtgccctcagcacaatgtcttattc
aatgacctcacagtggaggaacacatctacttctactccagattaaagggacgaagccga
gaagaagtgaaaacggagattgaccaaatgatcgaggatgtcgggctgccacacaaacgc
aaggaatttgccaagaacctgtcagggggaatgcagaggaaattgtcagtggcaatcgca
ttcgtgggagggtccaacatcgtcatcctggatgaacccacagcgggggtggacccatac
gcccggagggggatatgggaactactgttgaagtacaaacaaggtcgcacaatcatcctc
tccactcatcacatggatgaggcggacatcttgggagaccgcattgccattatctctcac
ggcaagatgtgttgctatggctcctccctgttcttgaagaaatactttggcagtggctac
tacctcactctggtcaaggccggagacgggcaaatgaccaaccagtgcactggagtcgag
cagtgccaggtgaaagaggagactggtgagtcattgaggagaaccagtctggttgaaggg
atcgcacgacagaactggagtaactctgaacccacagatgtcagtaaggtggtgtgtcgg
catgttcccgaggcggtgttcctcgagagcatcggccaggagatcacctacatccttccc
tatggcggggccaaggatggcacctttgcactcctcttcaaagagctggacctcaagatg
gccgacattggtgtcaccaactacggcatctcagataccacactagaggagattttcctc
aaagtggcagaggacacaggtgttgatgcggaaataccagctatcaacgcagctttggta
agagacaagacaagaagttcaagggaatccaagaggcaacggcaaagcctcaccaaagtc
ggggacactgcagacgaaatgcctgggaaaagtgctgaagacgagatgaaagtgaagttc
actagcagagtggaggatgtggagagagtggccaatgtgaatgggaagggctccagtgtg
atcacgggatgggaactgatccggagacagttcctggccctcttcatcaaacgctttcac
cacgcacgcaggagccgcaaaggcctcattgctcaggtgattctgcctgctgtcttcgtc
tgcctgtctctcatcttctccgtcatcgtcccgccttttgcggagtaccccaacctggag
ttgcagccttggatgtatggactgccccaaacgacattctacagcaatgatggaccgcca
aataacaccgaggttgctcgggtggcggactctttggtgaataatcctgggtttgggact
cgctgcatggccaacaacccaataccaaatctcccatgtgtcccgaatgattctaagtgg
ttcactcccacagtggatccctctatcagcaacatcttcgtcaatggaaactggagcatg
gccaacccttcccctaactgccagtgcagcactcctcaaaagaccaccatgttgccagat
tgcccacctggagccggtgggctgcctccccctcagaggacccagaataccacagacaca
ctgcaggacatgacggggcggaacatgacagacttccttttaaagacctacaaggaagca
ggcagaaaaaggtatggagggatttctgtcggaggggtcaactcccaagtcaggatgact
gaaccggaaatagaagctgtgatcagggatttgaggagcctattaaattcctcccaggat
aacacaaccgatcagatgctcctgaataccgaaatgctcctgaaagagctcgggaccagg
gataatgtcaaggtgtggttctacaaccaggcgtggcacggtattgtatcgttcctcaat
gtggccaacaacgccattctgagaggcaacctgccgccgggtcatgaccccagggagtat
ggaatctcctcctcaagccaccccctcaacctcaccaaggctcagctttcctaccaggca
atggccgccacctccaccgatgtggtggtgtccatctgtgtcatctttgccatgtccttc
atcccagcaagcttcgtcctcttcctcatccaggagcgtgtcagcaaggccaagcacttg
cagtttgtcagtggcgtcaacccgaccgtctactgggtcgccaacttcgcctgggatatt
tgcaactacatagtcccgtgtctaatagtcatcgtcatcttcctgtgtttccaacaaaaa
gcctacgtgtcccttcctaacttaccagctttgattctgctactgatgatgtatgggtgg
tctatcacacccatgatgtatccagcctcgtttatcttcaacgttcccagcacggcctac
gtggtgctgacctgcatcaacctcttcatcggcatcaatgggagcgtggccaccttcgtc
atggagttgttcgctgatgataacatctcgaaaatcaatggtattgtgaagcaggtgctg
ctgatttttccgcacttctgtctgggtcgagggctcatcgacatgggcaagaaccaggct
atggccaccttgtacgatagctttggggaagaccgttaccaggaccccctcagctgggac
atggtggggaagaacctctgtgccatggccatccagggggcagtcatgttcaccatcact
ctccttatccagtataagttctgctgcaaacccagactgatttctggagagtcattctcc
aaggaggacgaagatgtggacgtggcacaggaacgtgcacgcatccataacggtggctca
gagaaagacctgttgagaatctgcgatctttctaaggtgtactcggggaagaagattcct
gctgtggacagggtgtgcgtgggcgttccagccgcagagtgctttggacttctggggatt
aacggggcaggaaaaaccaccaccttcaagatgctgacgggggacatctccatctccgga
ggggaggccttcctaaacggatacagcatacggacagagatgagggacgttcaccagaac
atgggctactgcccgcagtttgacgccctcaacgaccttctcaccggacgagagcacctg
gagttctacgccagactacgaggcgtaccggagaaagaagtccccatggtggcagagtgg
ggcatccagaagctaggcctggtcaaatactccaacaagtcagccggtacctacagtgga
gggaacaaacgcaagctctccaccgccatggctttgattggctgtcctcctgtggtcttc
ctggatgagccaacaacagggatggaccccaaagccagacgcttcctgtgggactgcatc
ctgagtgtcatcaaagagggacgctcagtcatcctaacatcacacagcatggaggagtgt
gaggccctatgcacgcgcatggccatcatggtgaatggacagttcaagtgtctgggcagc
atccagcatcttaagagcaggttcggagaaggctacactgtgatcgtgagggtgggcggc
tcgccccccgccctgggccccgtggaggagtttgtccacgagtccttccccggtagcata
ctgaaggagaagcaccacaacacgctgcagtaccagctcccccacagcgagggcgctctg
gccagcatcttcagccatttcaccactcatcagcagaggctgggtgtggaggactactct
gtctcccagaccactctggatcaggtctttgtcaactttgcgaggtaccaacaggaggag
gacaatcaggccctgcaagcttatgacaacaaagtggacgtgtccgacgaaatgccaatg
gaaactcggatctcaaccgactcaactgtaccagagagcgtctga
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integrated database retrieval system
