Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416110
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Entry
139416110 CDS
T10872
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04512
ECM-receptor interaction
Brite
Lectins [BR:
ocla04091
]
C-Type lectins
Lecticans
139416110
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139416110
NCBI-ProteinID:
XP_071020504
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Position
9:complement(24890375..24926071)
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AA seq
2193 aa
AA seq
DB search
MGLQRGALRWALPWLLLVVAGGSHGSLVKTNLGLRVKRGQPAYLQEGDLQFHIPPVKDAC
KVEVVLNEPITQRVGTLTPQVFDCHYLADDVKYVHNGCPILKEDTVKLRLYRFTETETFT
EVFFLRVEIMEPDCNIIKLGPKSLVVPEFYGLSDTLDGNVVSFHYERMTSLECSIRVNTH
ETHLPGHGQLVIGEPDQLEARGDEPESFIPLRQQLDNKARAMCKTEDCLNGLKLAKVIKV
PCDEFLVMGLRYQHIDPPSPDVDYIALRLDLTDTRSGSIYQSERAWIPVHIPGAVPNQPP
KPAFMSMFILEVDQFILTPLSTVTLDAEDGETPKQLLVFNITKPPLEGFITHLSDHTRPI
FSFTWVDLNDMLIGYQPPNSSHTQRRNYEVEFEVHDFFFEKSAPIMVHMSVRTADTNAPR
VSWNMGLSLLEGQSRPITWDQLQIVDNDNFKAVRIITVDGLQHGRLTLRGGKGFMFTVAD
ILAGAVRYHHDDSDTTKDFIIFRITDGRHQTRHKFPINILPKDDSPPFLITNTVLELSEG
HTALLRGSILQASDMDSSDDYILFNITRPPQAGELMKIPGPGLTGYPVSRFLQKDLFHSV
VYYRHLGNEVFDDSFEVVLSDFHDPPNLSEPQVIVVHINPVPDQPPKEVPGVTRCLVVKE
TEVVHLTKKQLHFIDLESPDSELTYTVTTPPFYSRSYGGLDAGRLFLVDSIAKFTKDAEA
PVLRLFTQHAVNYMKVAYMPPILDIGPYPQHIQLVLSVTNQQGTTVAGICFNITVVPVDN
LAPEVHMKPLTVDEGGECWVGPDHLLLEDHDSTEESLRVELKREPQHGAVQLDGFSMKPG
QNFTVRDLKSLKVRYHHDSSETVGDAIELIATDGINAINFVLEVKVTLINDEVPVLMPGL
KPVLDCAEGQEVIITAEYIYATDADSDDNSLTYMIARQPYHGVVRKNAIVVDRFIQADIV
AGSITYEHTGAEIGLAPRHDTITFVISDGQAENAPSCCNDRGDTLKRGRTQVQESLPLYD
LKVTVFPVDSQMPSIATGDVFVVDEGGVAPITVAHLSASDVDTPLEELVISLVSPPQYGY
IENILPSPGSEKSNTGISIASFSYSDIMNGHVNYVQSRHQRIEPTADQLMLCVSDGKHTS
AHVHFYIIINPINDEVPEFLARNITVREGHMKELDPAVINAVDLDIPKNNLLFSVVQAPQ
HGTIMGRTYGNDVPANGRPVNRHRDAEVLVQDFTMQELRNGMSLMYMHDDSENMVDSFTI
QLNDGKHQLQRHVMVNVLPVNDEEPRVIRNNGLEVEAGEARLISSAILFAQDSDTTSQEI
VYMLESVPTQGLLQVKVGSDWVTQSAGMNCTQETVDMNLLRYLHTGPLGHTQDFFVFHLL
DGKNRSPAQHFHISLKDMEKGDIAIFVKPVKTSRGERVVLTTDVLLATDGTDKPEELFYI
VTVPPGNGHMEYIKHPGVAISTFSQMDIAANLVGYVHDNRATASLETLQFVVSNGKATRN
GTLEIYVETTDHVLPSLTCNSGLRVPQDSSMAVTPDALALSDPDTPPSDLLFFLAQPPQY
GTLLRGGVPLAAGGNFTQWDLQELEVTYRHGGGPSQIDRFAFTASDTTNRSFLLEGRVQT
EPVIFTIQIEPLDSSAPEVVQLQSLWKAEVLSDGRYGIYLSYRELRAQDGNTKDEDLTFH
IHRPPYFGYLENTIKGSFIQQRFTQRDLSKRTIVYIIDPATEALSDSLEFRVSDPLGNTG
PSHTLELKWSCVELAVSEYQACEDQGTVSLDVLRKGNMAESSYITIKVREVTATAGKDFT
LSPSSLIQFDPGVSKRSWRIEITQDHLEEAEETFEVTLVSPEGTVVGSTSKALVKIKDSG
KGQCGSSLGGKQVQSGPYPQHGSIHLETLPLAKGDQQMTWTRGDGMPQSVPAAVPATPHM
KLRALANRKTIPPSSVHRNGTDTVFTYHGIMSVRLEDDKSPSRKGRKANIQVTSRGRQQH
AAAAPPVAPNLNPKPVPKTKSDSLLPRTMPEKPNKEPSPSSGPKPCVPELMGLLHFNQSS
GGLLRCNGVSWKPWAPTDEMVSAQNCRKGWTYHSGNCYFLSTERKSSWSTAIRACRESHQ
ANLVSVFSKADMDWLWDFSGRKPFWIGLNDRESRGRWEWVGGEPITYTNWRKSPARGKRK
GTRRCVLVWRRAKWQIRDCKTGRGHLYMCYIKT
NT seq
6582 nt
NT seq
+upstream
nt +downstream
nt
atgggtttacagagaggggcactgcgatgggcacttccctggctgctgttggtcgtggct
ggagggtcacacggctccctggtgaagactaaccttgggttgagggtgaagaggggccag
ccggcctacctgcaggagggggacctgcagttccacatccccccggtgaaggacgcctgc
aaggtggaggtggtgctcaacgagccaattacgcagagggtggggacgctgacaccccag
gtgtttgactgccactacctggctgatgacgtaaagtatgtccacaatggctgcccgata
ctaaaagaagatactgtcaagcttcgactctacaggttcacagagacagagacctttaca
gaggtcttcttcctgcgtgtggagatcatggaacctgactgcaacatcatcaaactaggg
cccaagtccctggtggtgccagagttctacggcctgtccgacacgctggacggcaacgtg
gtgtccttccactatgagaggatgaccagtcttgagtgtagcatccgtgtgaacacccac
gagacacacctcccgggtcatggtcagttggtcattggggagccagaccagctggaggcc
agaggggacgagccggagagcttcattcctctccggcagcagctagataacaaggccagg
gccatgtgtaagactgaggactgcctgaacggcctgaagctggcaaaggttatcaaagtg
ccctgtgatgagttcctggtgatgggccttaggtaccagcacatagacccaccgtctcca
gacgtagactacatcgccctccgactggacctcaccgacaccaggagcgggagcatatac
cagtcggagcgggcctggatacctgtccacatccctggcgctgttcccaaccagccgccc
aagccagccttcatgtccatgtttatcctggaagtggaccaattcatcctcacgcccctc
tccactgtcaccctggacgcagaggacggagagacccccaaacagctgctggtgttcaac
atcaccaagccccccctagagggcttcatcacccacctgtcagaccacacgcgacccatc
ttctccttcacctgggtggacctcaacgacatgcttatcggctaccagccacccaactca
tcccacacccagcgtaggaactatgaggtggagtttgaggtacatgacttcttctttgag
aagagcgcccccatcatggtccacatgtcagttagaacagcagacaccaatgcacccagg
gtgtcatggaacatgggtcttagtcttcttgaaggtcagtctcgtccaatcacttgggat
cagctccagattgtggacaacgacaacttcaaggctgtccgcatcatcactgtcgacggc
ctccagcatggcaggctaacactgagaggtggcaagggtttcatgttcaccgttgccgac
atccttgcgggcgctgtgcgctaccatcacgacgacagcgacaccaccaaggacttcatc
atcttccgcatcaccgatgggcgccaccagacccggcacaagttccccatcaacatcctg
cccaaggatgacagcccaccattcctcatcaccaacacagtgctggagctctctgagggc
cacacggccctgctgagaggatccatactgcaggcctcagacatggactcaagcgacgac
tacatcctgttcaacatcacccggccaccgcaagctggagagctcatgaagatccctggt
cctggactcactggttatcctgtcagccgtttcctgcagaaggacttgttccactctgtg
gtctactaccgccatctagggaatgaggtgtttgatgactccttcgaagtggtgctctcg
gacttccatgacccacccaacctttcagaacctcaggtcatagtggtgcacatcaaccct
gtgcctgaccagccacctaaagaggtccctggggtgactcgctgcctggtggtcaaagag
acagaggtggtccacctgaccaagaagcagcttcacttcatcgacctggagtcccctgac
agcgagctcacatacactgttaccactccgcccttctacagcaggtcttatgggggcctt
gatgcagggaggctgttcctggttgacagcattgccaaattcaccaaggatgctgaagcc
ccagtgttaaggttattcacacagcatgcagtcaactacatgaaagtggcctacatgcct
cccatcctggacattgggccttacccgcagcacatccagttggtgctctccgtcaccaac
cagcagggaaccacagtcgctggcatctgcttcaacattaccgtggtgccagtggacaac
ctggccccagaggtgcacatgaaacctctgacagtggacgagggtggggagtgctgggtg
ggtccggaccacctgctgctggaagaccatgactctacagaggagagcctgagagtggag
ctgaagagagagcctcagcacggagctgttcagctggatggcttctccatgaaaccgggc
cagaacttcactgttcgcgacctgaaaagcctaaaagttagatatcatcacgacagctcg
gaaacagtgggcgatgccattgaattaatcgctaccgatgggattaacgcaatcaacttt
gttctggaagttaaggtgacactgatcaatgatgaggttccagttctcatgccaggtctg
aaacctgttctggactgtgcagagggacaggaagtcatcatcactgctgagtacatttat
gccacagacgcagacagtgacgataacagtctgacctacatgattgcccgtcagccatac
catggcgtggtgcgcaaaaacgccattgtggtcgatcgcttcattcaggcagacattgtc
gcagggagtatcacctacgaacacacaggagcggagattggactagcccctcgacacgac
acaatcacgtttgtgatatccgacggccaggcggagaacgctccgtcatgctgtaatgac
cgaggggacacattgaaaagaggcaggacacaagtccaggagagcctgcctctgtatgac
ctgaaggtcaccgtgttccctgtggacagtcagatgccttctattgcaacaggagatgtt
tttgtggtggatgaggggggtgtggcccctataactgtagcccacctcagtgcctcggat
gtggacactcccctggaggagctggtgatcagcctggtctctcctccccagtatggctac
attgagaatatcctgcccagtcctggatctgagaaaagcaacacaggcatcagcatcgcc
tccttctcttacagtgacatcatgaacggacatgtgaactatgtccagtccagacaccag
aggatcgagccaaccgctgaccagttgatgctctgcgtctctgacgggaaacacacctct
gcccacgtccacttctacatcatcatcaaccccatcaatgacgaggtcccggagtttctc
gccagaaatatcacggtgcgagagggccatatgaaggagctggaccctgctgttataaac
gcggtggatctggacatccctaagaacaacctgctgttcagcgtggtccaggccccccag
catggcaccatcatgggccgaacgtatggcaacgacgtgcccgccaatggaagacccgtc
aacaggcacagggacgcagaggtgctggtccaggacttcaccatgcaggagttgaggaat
ggtatgtctctgatgtacatgcatgatgactctgagaacatggtggacagcttcaccatc
cagctgaacgatgggaaacaccagctccagaggcacgtgatggtcaacgtactccctgtc
aatgacgaggagcctcgagtcataaggaacaatggactggaggtggaggcaggcgaggct
aggctgatctccagtgctattctctttgctcaggacagcgacactacctctcaggagata
gtctacatgttggagagcgttcccactcagggactgctacaggttaaggtaggctctgac
tgggtgacccagtctgcggggatgaactgcacccaggagacagtggacatgaacctgctg
cgctacctccataccgggccactgggacacacacaggatttctttgtgttccacctgctg
gacgggaagaaccgctcccccgcgcagcacttccacatctccctcaaggacatggagaaa
ggagacattgccatttttgtgaagccggtgaagaccagccgcggtgagcgcgtggttctg
accacagacgtcctgctggcgacggacggtacagacaaacccgaggagctgttctacatc
gttacagtcccccccggcaacggccacatggagtacatcaaacaccctggggtggccatc
agcaccttcagccagatggacatcgctgccaacctggtgggctacgtccacgacaacaga
gccaccgcgtcgttggagacactacagttcgtcgtcagcaatggcaaggccacccgtaac
ggcaccctggagatttacgttgagaccaccgaccacgtgctgccatcactgacctgtaac
agcggcttgagagtccctcaagactcctccatggcggtgacccctgacgccctcgccttg
tccgaccccgacaccccacccagtgacctgctcttcttcctggcccagcctccgcagtat
ggcacactgcttcgtggcggtgtcccgctcgctgccgggggtaacttcacccagtgggac
ctgcaggagctggaggtgacttacaggcacgggggcggcccgtcgcagatcgaccgcttt
gccttcacggcctcagacactaccaacaggagtttcctgctggaggggagggtgcagacg
gaacctgttatctttaccattcagattgagcctttggacagctcggctcctgaggttgtg
cagctgcagtctctgtggaaggctgaagtcctgtctgacggtcgctatgggatctacctc
tcgtaccgggagctgagagcgcaggacggcaacaccaaggacgaagacctcaccttccac
atccacaggccaccatactttggctacctggagaatacgattaaaggcagctttatccag
cagcgtttcactcagagggacctgagcaaaaggactatcgtgtatatcatagacccagcg
acagaagccctgtcggacagcctggagttcagagtgtctgaccccctggggaacactggg
ccctcccacacgctggagctgaagtggtcttgtgtggagctggctgtgtctgagtaccag
gcatgtgaggaccagggcactgtctcactggacgtcctacggaaaggcaacatggccgag
tcctcgtacatcaccatcaaggtgagagaggtcacagcgactgctggaaaggatttcact
ctgagcccgtccagcctaatccagtttgatcctggcgtatccaaaaggagctggcgtatt
gaaattacccaagatcacctggaggaggcagaggagacatttgaagtgacactggtgtcc
cctgagggaaccgtagtaggcagcacctccaaagcgctggttaaaatcaaggactctggg
aaaggacagtgtggatccagtctgggggggaagcaggttcagtcagggccgtacccccaa
catggctccattcatttggagacactaccccttgccaagggagaccagcagatgacctgg
acccggggcgatggtatgccccagtctgtgcccgctgctgtgcccgccacgccccatatg
aaactcagagccttggccaacagaaagacgattccaccatcgtcagtccatcgtaatgga
acagacactgtgttcacgtaccacgggatcatgtccgtgcgcctggaggatgacaagtct
ccgtctaggaagggaaggaaggctaatattcaggtgaccagcagagggcggcagcaacat
gcagccgcagcaccaccagtggctcccaacctcaaccctaaacctgtccctaagacgaag
agtgacagcttgctcccacgtacaatgcctgagaagcccaataaggagccttcacctagc
tctggccccaaaccctgtgtcccagagctgatggggctcctacactttaaccagagctca
ggcgggctcctccgctgcaacggggtctcctggaagccctgggctcccactgatgagatg
gtcagtgctcagaattgtcgtaagggttggacctatcacagcggcaactgctacttcctg
agcaccgagcgcaagtcgtcgtggagcaccgccatcagggcatgcagggagagtcaccaa
gccaatctggtgagcgttttttccaaggctgacatggactggctgtgggacttcagtgga
aggaagccattctggataggtctaaacgacagggagagccgaggacgctgggagtgggtg
ggtggagaacccatcacctacaccaactggaggaagagcccggccagaggcaagaggaag
gggaccaggaggtgtgttctggtgtggaggagggccaagtggcagatcagagactgtaag
acgggcaggggacatctctacatgtgttacatcaagacgtga
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