Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416117
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Entry
139416117 CDS
T10872
Name
(RefSeq) focadhesin isoform X1
KO
K27498
focadhesin
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
139416117
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139416117
NCBI-ProteinID:
XP_071020518
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Position
9:complement(25140430..25207147)
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AA seq
1815 aa
AA seq
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MSENLKKRFDFPSPLIQAQTVRSLVAAVLKEKGQNERIGQSSTQGPAMEALWEQCCSDCA
AVRSACCDAVVLLVEQAHADLHYILNSVLNLLPSARNVQGLIKVIGRLLQVQADQRDKGT
PFTCPYSIRSSPHPYIIVLENRPDCWPVLLLEIDDFIQQAADRGESVYVTMLAPFLRYLY
CEPQRLPEYALLRHSLLRVLLPPQPGDHNQEKKKDQETEEDPGQSPVVCNSLVRCLYELV
PHMQVDSVEAVLELRGLMEAMIPALEVADWGSERAQLALQLLCACQLSLKLSGDCRPLLQ
LLHQLLPTRTEEFPVEDMMVGLALLLLEASASQQTGLLTLALSLAPPECERPPWGTPVLV
LPLLQVLSCSSLMEPLTDSRTHTRNQSLAQSLLQNAQRESSKPAEKVSQLALPLSPWSSE
LLVATQVLRQVTGDPVAASEWLLAVTSALPLSQRVPSPLTLTVAHLVVTGQQDVCRLALK
TAAAIAQADPAQVPSLLHVLLFKLGKECDPDLSHAVLYSLPNFGTHKLCLPQVLHTLQML
GSAPKLRAVALRLMTALWEKQDRVYPDLQRLISQFEKSVLLGKEAQWEQILARAACVRDI
CRERPYQHGGDMLAAITHTLAQCSRPDQAAPAALALQGLHELCRTEVVDVGSTWTALGPK
LSCDSRPLVVKAIAELLALLPQLTVKTEEYEKLKEQVVSFLWGYALNKEPEVASCGYKAL
SEFSEAAHTLLHLPEQARPVAKLPESVEEEQVKEKEEEEEEEEDLSIPGPSYVKLLGLTS
LSVLPAFELFLTSLVRQEMSQMPRGVYHSALKRGSLRSDQGKTVAGIPGFMLKTYEKSKQ
PGLKPGLAAGLLLSFDLPVQTDRDGRPINRFLLSRGRSYQQMLATLIHEVNIQPSEWHRA
LLLPQAWRGFMSRAYHAVLQGRRAELEMQQKQGKESPEELQYKQHCAWLWVRDQLTDVVK
SAAKDSPVVQGNSILALSGLASVLAKYESNMPADTEGGLGVGPEILSTSTWLAMVLDTLL
SIVSSSYKPRGQVFPWFLHRSYSGENTASAIARSCAALALSLVVPVLVAWHKDSVPQVLA
TLRAGLPGSPTADDSQAVQFHSGLALGMLLSCLHQERLSDVSGQKITELLMSSLDTLEAC
CFDSNLEYNAGCVLGLGLVLGALSGSGQTEHRARVGLTLDKLLEALQGDSSSQGRMLQEV
LAYSVAGVGVAAFSGGVVDALKSEEIMSTLRSMTEESQQTPGFSLALGVVVHGLSSCGHG
KAEDIQPRLLDAWIKILLAEGCPTMQRLAAVNGLVALVGSETGILQLKNESEQSSQQQSR
MNEVIRAITQIITFSGAIGLQSNSACLVGHLHLAHMSTSHSRTAVPQDFSYLPEKSVIRS
VVDFLTEAGKKGPEFAHPSLVKTALSSLATVGGSYQYPPVNWSAILSPLMRLNFGEVVQH
QCIELASNQAQSSQSASLFLGVWLSPPLVHSLSMWTRGHLYDNLSVWMKHVSEDKLQVYV
ETLGLQQFQQDVRPQRLAICLSLLRGLAQAMALPNPPNTVWAVLCTTIEKIFNVLPNHIQ
DQEVHLYVGVSKCLSELADTEIDRIAQVTEEQMEKTSFILAHLTSQGRVPLLGLNDVIAA
VLRGWSSHKVGWLLLQTFYQCRLAASPNTGVSKRMEWLLELMGLIRNVAYGVTSVKCGDT
RQATDFLLQVFAAAVISWGDHTMPLLLGVRTQWFPWQQGSEPPGLPHALYGDAVLAEQSV
SLCLLGLPHSLRQLLAKEPWREQSQKFIDWLFSITEGPETGLSETSINTAKAALLALKSS
TDFKKKAVWTRAYGW
NT seq
5448 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagaatttgaaaaagagatttgactttcccagcccgctcatacaggcccagacg
gtgaggagtctggttgcggctgtgctgaaagagaagggccagaatgagaggatcggccag
tcctccacccagggcccagctatggaggccctgtgggagcagtgctgcagtgactgtgct
gctgtgcgctcagcctgctgtgacgccgtggtgctcctggtagagcaggcccacgctgac
ctgcactacatactcaacagcgtcctcaacctcctgccctccgccaggaatgtgcagggg
ttgataaaagtgataggaaggcttctccaggtgcaagcggaccagcgagacaaaggaacg
cccttcacttgtccctactccatcaggagcagcccccatccatacatcatcgtcttggag
aaccgtcctgactgctggcccgttctgctgctggagattgacgacttcatccagcaagcc
gctgacaggggtgagtctgtgtacgtgaccatgttggcccccttcctgcgctacctgtac
tgtgagccccagcggctgccagagtacgctctgctcagacacagcctcctcagggtccta
ctgcccccccagccgggggatcacaaccaagaaaagaagaaagaccaggaaactgaagag
gacccgggacagagccctgtggtatgcaacagcctggttcgctgtctctacgagctagtt
cctcacatgcaggtggacagtgtggaggcagtgttggagctgcggggcctcatggaggcc
atgatcccggctctggaggtggccgactgggggagtgagagggcccagctggccctgcag
ctgctgtgtgcctgtcagctaagtctgaagcttagcggagactgccgaccactactccaa
ctactgcaccagctcctccccacccgcacagaggagttccctgtggaggacatgatggtg
ggcttggctctgctccttctcgaggcctcagcgtcccagcagaccgggctgcttacactg
gccctaagtctggcccccccagagtgtgagcgacccccctggggtaccccggtgctggtg
ctgcctctcctgcaggtcctctcctgctcatccctcatggagcccctgacggactcccgc
acacacacacgcaaccagagcctggcccagagcctcctacagaatgcgcagagagagtcc
tccaagcctgctgagaaggtgtcccagttagccttacccctcagcccgtggtccagtgag
ttgctggtggccacccaggtcctacgccaggtgacaggggacccggtggcggctagcgag
tggctcttggcggtgacctcggccctgcccctgagccagcgcgtcccgtctcccctcacc
cttaccgtggctcacctggtggtcaccggtcagcaggacgtctgcagactggccctgaaa
accgcagctgccatcgcccaggcagaccccgcacaggtcccatcccttcttcatgttctg
ttgtttaagctggggaaggagtgtgacccagacttgtcccacgctgtgctgtactcgctg
ccaaactttgggacccacaagttgtgtcttccccaggtgcttcacactctccagatgctg
ggcagcgcccccaagctgagggccgtggcactgcgcctcatgaccgctctgtgggagaaa
caggaccgtgtgtaccctgacctccagaggctgatctcccagttcgagaagtctgtgctc
ctggggaaggaggcccagtgggaacagattctagccagggctgcctgtgtcagagacatt
tgcagagagaggccctaccagcacggaggggacatgctggctgccatcacacacactctg
gcccagtgttccagaccagaccaggccgcccctgctgccttggccctgcaaggtctacac
gagctttgccgcaccgaggtggtggatgtgggctccacatggacagccttgggccctaag
ctgagctgtgactctagacctctggtggtcaaggccatagcagagctcctggctctgctg
ccacagctcactgtcaagacagaggagtacgagaaactcaaagagcaggttgtcagcttt
ctctggggctacgctctcaacaaggaacctgaggtggccagttgtggatacaaggctctg
tcagagttctcagaggcagcgcacacgctccttcacctccccgagcaggccaggccagtc
gcaaaacttcctgaaagtgtggaggaggaacaggtaaaggagaaagaggaggaggaggag
gaggaggaagatttgtccattccaggtccatcctatgtgaagctcctaggtctcacatcc
ctctcagtcctgccagcatttgagctcttcctgacctcactggtgaggcaggagatgagt
cagatgccccgtggggtgtaccactctgccctgaaaagggggagcctccggtcagaccag
gggaaaacggtggcagggatcccaggcttcatgctgaaaacctatgagaagagcaaacag
cctggtctcaaacctggcctggcagctggcctccttctctcctttgacttgcccgtccag
accgaccgagatggacgaccaatcaaccgcttcctcctcagcagggggcggagctaccag
cagatgttagccactctcattcacgaggtgaacattcagccatcagagtggcatcgggcc
ctcctcctaccccaggcctggcgagggttcatgagccgagcgtaccatgccgtcctacag
ggccgtcgggcagagctggagatgcagcagaagcaaggcaaggagagtccagaggagctg
cagtacaaacagcactgtgcctggctctgggtcagggaccagctgactgatgttgtcaaa
tctgcagcaaaggacagtccggtggtgcaggggaactccatcttggctctgagcggtctg
gcttcggtgctggccaaatacgagagcaacatgcccgctgatacggagggaggacttggg
gtgggccctgagatcctgtccacatccacctggctggccatggtcctggacactctcctc
agcatcgtcagcagcagctacaagcccagaggacaagtcttcccctggttcctacaccgg
tcctactcgggagagaacacggccagtgccatcgcccgctcctgtgccgccctggccctg
tccctggtggtgcccgtgctggttgcctggcacaaggacagcgtgccacaggtcctagcc
accctgagggcggggcttcccggctcgcccaccgcagacgactcccaggccgtccagttc
cactctggcctggccctgggcatgctgctgtcctgcctgcaccaggagaggctcagtgat
gtgtcaggtcagaagatcacagagctgttgatgagttctctagacactctggaagcctgc
tgctttgacagcaacctggagtacaatgcgggctgtgtgctgggactaggcctggtgctc
ggggcccttagtggcagtggacagacagaacaccgggcccgtgtgggcctcaccctggac
aagctgctggaggccctacagggggacagcagcagtcagggtcgcatgctgcaggaggtg
ttggcctactctgtagcaggtgtgggggtggcagccttcagtggaggggtagttgatgcc
cttaaatcagaggagatcatgagcactctccgtagcatgacagaggagagccagcagact
ccaggtttctcattggctcttggcgtggttgttcatggtctgtcatcctgcggccacggc
aaggcagaggacatccaaccccgccttctggatgcctggatcaagatcctactggctgag
ggctgtcccaccatgcagaggctggctgctgtcaacggcctggtggctctggtgggatca
gagactggcatccttcagctgaagaatgaatctgagcagtcctcccagcagcagtccaga
atgaacgaggtcatacgggccatcacacagatcatcacattctcaggggccatcgggctg
cagtctaacagtgcctgtctggtggggcacctccacctggcccacatgtccaccagccac
agccgcacagcagtgccccaggacttcagttacctcccagagaagagtgttatcagatct
gttgtggacttcctcaccgaggcaggaaagaaaggtccagagtttgcccaccctagcttg
gtgaagacagccctgtcctccctggccacagtgggagggagttaccagtacccccctgtc
aactggagcgccatcctgtcccctctcatgaggctcaactttggtgaggtggtccaacac
caatgtatagagctggcatccaaccaagcccagtcttcccagagtgcatctctattcctg
ggggtgtggctgagcccacccctggtccacagtcttagtatgtggacgcgaggtcacctg
tacgacaatctctctgtatggatgaagcacgtgtcggaggacaagcttcaggtttacgtg
gagaccctgggtctgcagcagttccagcaggacgtccggccccagcgcctggccatctgt
ttgtccctcctccggggcctggcacaggccatggccctccccaacccgcccaacaccgtc
tgggccgtcctgtgtactactatagagaagatcttcaacgtactccccaaccacatacag
gaccaagaggtgcacctgtacgtgggagtctccaaatgtctgtccgagttggctgacaca
gagatcgaccgcatcgcccaagtcacagaggaacagatggagaagaccagcttcatcctg
gctcacctcacctctcaaggccgagtgccactcctgggcctcaacgatgtcatcgcggcc
gtgcttcggggttggtccagccacaaggtgggctggctcctcctgcagactttctaccaa
tgccgtctggccgccagccccaacacaggtgtgtccaaacgaatggagtggcttttggag
ctgatgggactcataagaaatgttgcttacggagtgacctctgtcaagtgtggagacacc
aggcaggccactgacttcctgctccaggtattcgctgcggcggtgatctcctggggcgac
cacaccatgcccctccttctgggtgttaggactcagtggtttccatggcagcaggggtca
gagccgcctggtctacctcacgctctctacggtgacgccgtgctggccgagcagtcagtc
tcgctatgcctgttgggattgccccacagcctgaggcagctattggctaaagagccctgg
agggaacagtcacagaagttcatagattggcttttcagcatcactgaaggtccggaaact
ggtctgtcagagacttccatcaacactgccaaagctgccttgctggctctgaagtcctcc
acggatttcaagaaaaaagcggtgtggacgcgagcgtacggttggtga
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