Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416134
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Entry
139416134 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase DTX4-like isoform X1
KO
K06058
deltex [EC:
2.3.2.27
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
139416134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139416134
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139416134
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
139416134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DTC
WWE
zf-C3HC4
zf-RING_11
zf-RING_UBOX
zf-rbx1
zf-RING_2
PHD_NSD
zf_RING_Vps8
zf-ANAPC11
zf-UDP
zf-RING_Vps41
PHD
Motif
Other DBs
NCBI-GeneID:
139416134
NCBI-ProteinID:
XP_071020557
LinkDB
All DBs
Position
9:25925057..25939506
Genome browser
AA seq
748 aa
AA seq
DB search
MLLASAVVVWEWLNEHGRWRPYSPAVSHHIEAVIRNDPRGGSVVLGQVDSRLSPYIIDLH
SMHQFRQDTVLWRDPRLSTVTPGTLRPVRRSFYDPTSAPGQGWLWEWENDTGSWTAYDTE
VGIAIQAARDRQQPWLDLAPLGFCYLIDFQSMTQINGQTQRCRRIQRRSDLAYPLVSGPL
PKTHHAWGPSPAGLPGVGVSGVGMGNGNGSAYPSGALPASAITSLGQPCACQQCMLVLSV
KAGAMATAHTLGRRPPQNKPPSPKLGGGYSAMGGSYSLTLPRPPSSMARSLSPHRTSAGG
ASGGVGVGGGFAHSLSLLGSATAALSLTSTRPPPPPLPPLPPPPPPPPSSIASSVILPLS
SSFSMASSGPPSMPAPAPLLISTAASSCTPSPSARVLGPVSSAAAACAAPLPPRASLAGL
SRPALQRIAMAQSRALIASGVPTVPVKNLNGSSPVHPALAGITGILMSAAGLPVCLTRPP
KLVLHPPPVSKSDIKPVPGLGHCCRKTTKKQARKGKTPEEVVKRYLQKVRNPPEEDCTIC
MEALAGPSGYKGPGVGGIQRAESVGRLAQCGHQYHLQCLVAMYNNGNKDGSLQCPTCKTI
YGVKTGNQPPGKMEYHVIPHSLPGHPDCKTIRIIYNIPPGIQGPEHPNPGKPFTARGFPR
HCYLPDSEKGRKVLKLLLVAWDRRLIFSVGTSSTTGESDTVIWNEVHHKTEFGSNLTGHG
YPDPGHLDNVLEELKAQGITEEECLPRD
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgttactagcgtcggccgtggtggtatgggaatggctgaacgagcacgggcgctggcgg
ccttacagcccggccgtctctcaccacatcgaggcagtcatccgcaacgacccacggggt
ggtagtgttgtcttaggccaggtggactctcgcctctcgccctacatcatcgacttgcat
tccatgcaccagttccgacaagatacagttctgtggcgtgaccctcgtctctctaccgtt
accccaggtaccctccgaccggtgcgtcgcagcttctacgaccccacgtcggcgccgggc
cagggctggctgtgggagtgggagaacgacacaggctcgtggacagcctacgacacagag
gtgggcatcgccatccaggcagcacgcgaccgtcagcagccctggctggacctggcgcca
ctgggcttctgttacctcatcgactttcagagcatgacccagatcaacgggcagacgcag
cgctgccgccgcatccaacgccgctccgacttggcctaccctctggtgtcggggcccctt
cccaagacacaccacgcctggggacccagccctgcaggactgccgggggtgggggtttcc
ggagtgggcatggggaacgggaacggtagcgcctacccaagcggtgccctgccggcctct
gccatcacatcgctgggccagccctgcgcctgtcagcaatgcatgctggtcctgagcgtc
aaggcaggcgccatggcgacggctcacaccctgggcaggaggccacctcagaacaagccg
cccagccccaaactaggtgggggttactcggccatgggggggtcttactcgctgactctc
cctcgccccccctcctccatggccaggtccttgtccccccacaggacgtccgcgggcggg
gctagcggtggtgtaggggtcggcggcggcttcgcccactcgctctccctcctgggttcg
gccaccgccgcactctccctcacctctacccggccccctcccccgcctctaccccccctt
ccgcctcctccaccgcctccgccctcctccatcgcgtccagtgtcattcttcctctctcc
tcttccttctccatggcgtcctccggccctccgtcaatgcccgcgccggcccctcttctc
atctccacggcagcctcctcctgcaccccctcaccctccgcccgtgtcctggggcccgtg
tcttcagcagcggcggcctgtgcagcccctctgccacctcgtgccagccttgccgggctc
agccgacccgccctgcagcgcatcgccatggcccagtccagagccctcatcgcctccggt
gtcccaacggttcctgtgaagaacctcaatggatctagccctgtccaccctgcattggca
ggtattacagggatcctgatgagtgccgcaggacttcctgtctgtctgacccgccctccc
aagctggtgctccaccccccgcccgttagcaagagtgacataaagcctgtccccggcctc
ggccactgctgccgcaagaccaccaagaagcaggctcgcaaaggcaagacccctgaggaa
gtagtgaagaggtaccttcagaaggtccgcaatcccccagaggaggactgcactatctgc
atggaggccctggctgggccctcgggatacaagggccccggagttgggggaatccagcgg
gcagagtcggttggtcgcctggctcaatgtgggcaccagtaccacctgcagtgcttggtg
gccatgtacaacaacggcaacaaggacggcagcctacagtgccctacctgcaagaccatc
tacggcgtgaagacggggaaccagccacccggcaagatggagtaccacgtcatcccccac
tcgctgcccggccaccctgactgcaagaccatccgcatcatctacaacatcccccccggc
atccaggggcctgagcacccgaacccgggcaagccattcaccgcccggggattcccccga
cactgctacctccctgatagcgagaagggacgcaaggtactgaagctgctgctggtggcg
tgggaccgccggctcatcttctcggtgggcacgtccagcaccacgggcgagtcggacacg
gtcatctggaacgaagtgcaccacaagactgagtttggctccaacctaacaggccatggc
taccccgacccaggccacctggacaacgttctggaggagcttaaggcccaggggatcaca
gaggaggaatgcctacccagagactga
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