Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416206
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Entry
139416206 CDS
T10872
Name
(RefSeq) protocadherin-7-like
KO
K16498
protocadherin delta 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
139416206
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ocla01009
]
139416206
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139416206
Protein phosphatases and associated proteins [BR:
ocla01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
139416206
Cell adhesion molecules [BR:
ocla04515
]
Cadherins
Protocadherins
139416206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Mid2
TMEM154
KIAA1549
Adeno_E3_CR2
Motif
Other DBs
NCBI-GeneID:
139416206
NCBI-ProteinID:
XP_071020706
LinkDB
All DBs
Position
9:31389230..31613073
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AA seq
1258 aa
AA seq
DB search
MRTTGAVDYICYSILILQLLNQPDAKQVLRYRLAEEGPADVRVGNVAKDLGIVAGSGEVT
FTLESGSDFFKIDNITGELTTNERRIDREKLQQCQMIFDENECFIDFEVSVIGPAQSWVD
LFEGKVIILDINDNTPSFPSPVLTLSVEENRPIGTLYLLPTATDRDFGRNGIERYELIQD
SGESSRRLGSNSGGRGVDSRRFDEGAARSSVFELQVADTTDGEKQPQLIIKGALDREQRD
SYELTLRVRDGGDPPRSSQAILRVMITDVNDNSPRFEKAVYEADLPENSSPGAPILQLKA
ADADVGVNGQIEYVFGAATESVRRLLRLDEGSGWLSVLHRIDREEVSQLRFTVMARDRGQ
PPKMDKATVVLNIKDENDNVPAIEIRKIGRIFLKDGVANVAEDVVVDTPIALVQVSDRDQ
GENGIVTCTVVGDVPFQLKPASEIEGEMNKKKYFLHTSAPLDYEATQEYNVVIVAVDSGS
PSLASNNSLIVKVGDFNDNPPIFSQNVVEVSFLENNAPGERVTTVQAIDADSGKNAEIAY
SLVSSVNGIFSIDADSGDIRVNTILDREQTERYEFKVIAKDKGMPILQGSATVVVLVADK
NDNEPKFMQDVFTFYVKENLTPNSPVGMVTVIDADKGQNAEMSLFIEEEEDIFSIENDTG
TIFSTMSFDREQKTSYTFRVKAVDGGDPPRSATATVSLFVMDENDNPPTVTFPINSTYTL
LPPSSNVRTVVRTVIATDTDTGINADLNYSIIGGNPFKLFDIDGGSGVISLVGKLEQKHY
GLHRLVVQVNDSGQPSQSTTTLVHVYVNETLSNSTIVEAQVAKSLGTPLNTNIAGDPNYD
LGKQRLSIVIGVVSGIMTVILIILIVVMARYCRPKNKNGYEAGKKDHEDFFTPQQHDKGK
KPKKDKKNKKSKQPLYSSIVTIEASKPNGQRYDGVNEKLSDSPGMGRYRSVNGGPGSPDL
ARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGTGDNISLGSDHCSEYSSQTI
NKYNKQPFRRVTFSVVSQPQDPHQQGSLQSCYDSGLEESETPSSKGSSGGPRLGALPLPE
DSYERTTPDGSVGEAEHMENDTRPLPDVAMTGKCTRECDEYGHSDSCWMPVRTSPERRPK
TTTTQQPKLSTFMTGGGSGSSPPEQHQQHPGSQEALAAMSNGDPSSHVMLGNDRNRSLLN
KKTASSSSSYEGFGSPSFSPPGVEERVVGHPIEEIPLAPTGEYKPSPCGTLTRREVYL
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atgaggactactggcgcagtggactatatatgctacagtatactcatcctgcagctgctg
aatcagcccgatgccaagcaagtgttgcgatatcgcttggctgaggagggacccgccgat
gtcagggtagggaacgtagccaaagacctcggaatcgtcgccgggtctggtgaggttacg
tttaccctcgagtccggctctgattttttcaaaatagataatataacaggcgagttgacc
actaatgaacggcggatagaccgtgaaaaattacagcagtgccaaatgatatttgatgaa
aacgaatgtttcatagattttgaagtgtcagtaattggaccggctcagagctgggttgac
ctgttcgaggggaaagtcattattttagacataaatgacaacaccccgtctttcccctct
cctgttctgacactgtcagtggaagagaacagaccgattggcactctctatctcctgccc
actgccaccgacagagattttggcaggaacggaattgagagatatgagcttattcaggac
agcggggagagctccaggcgcctgggttcgaactcagggggacgcggagtggacagcagg
agatttgatgagggggcagccaggagcagcgtctttgaactgcaagttgctgacacaact
gatggggaaaaacagccgcagctcatcattaaaggagcgctggacagggagcagagggac
tcttatgagctcaccctgcgtgttagggatgggggcgaccccccacgctcctcccaggcc
atcctgagggtgatgatcactgatgtgaatgacaacagcccccgctttgagaaggctgtg
tatgaggctgacctgccagagaacagctcccctggtgcccccatcctgcagctgaaagca
gctgatgcagacgttggggtgaacggtcagattgagtatgtatttggtgcggccacagag
tcagtgcgtaggctgctgaggctggacgagggctcggggtggcttagcgtgctccatcgt
attgaccgcgaggaggtgagccagctgcgcttcacggtaatggcaagggatcgaggtcag
ccacccaaaatggacaaggcaaccgtggtcctcaacatcaaagatgagaacgacaacgtg
cctgctatcgagattcgtaagatcggacgcattttcttgaaagatggtgtggccaatgtg
gcagaggatgtagtggtggacacgcctatagctttagtccaggtgtcagaccgcgaccag
ggcgagaacggcatcgtgacctgcactgtggtgggtgacgtgcccttccagctcaaaccg
gccagtgagattgagggtgagatgaataagaagaaatactttctccatacatcagccccg
ctggactatgaggccacacaggagtacaacgtggtcatcgtggctgtggactcaggaagc
cctagcctggccagtaataactcgcttatcgtgaaggtgggagacttcaacgacaaccca
cccatctttagccagaacgtggtggaggtgtcctttctggaaaacaatgccccaggcgag
agggtgaccacagtgcaggcaatcgatgctgacagtggcaagaatgcagaaatcgcctac
tccctcgtctcctctgtaaatgggatattctccattgatgcagacagtggtgacatcaga
gtaaacaccattctggacagggagcaaacagagaggtatgagttcaaagtgatagctaaa
gataagggcatgcccatacttcaggggtcagccactgtggtggtcctggtggcagataag
aacgacaatgagccaaagttcatgcaggacgtgttcaccttctacgtcaaagagaaccta
acacccaacagccctgttggcatggtgaccgtcattgacgctgataagggccagaacgct
gaaatgagcctcttcatcgaggaagaggaggatatcttctccattgagaatgacacagga
accattttctccaccatgtcatttgaccgcgagcagaagacttcatacacatttagggtc
aaggctgtggacggtggagacccacccagatccgccacagccaccgtgtcactttttgtg
atggatgagaacgacaacccgccaaccgtcaccttccccatcaacagcacttacactctc
ctgcccccctccagcaacgtcaggactgtagtacgaaccgtcatagccactgatacggac
acagggatcaacgctgacctgaactacagcatcatcggtggaaaccccttcaaactgttt
gatattgacggaggcagcggggtcatctcactggtggggaagctggagcagaaacactat
ggcctccatcgactcgtggttcaggtgaacgacagcgggcagccgtcccagagcaccact
acccttgtgcatgtctatgtcaatgagaccctctccaactccaccattgtagaggcccag
gtggccaagagcctgggtacgccgctcaataccaacatcgctggtgaccccaactacgac
ctgggtaagcagcggctgagcatcgtcatcggggtggtctcgggcatcatgacagtcatt
ctcatcatcctcatcgtcgtcatggcccgttactgccgccccaagaacaagaatggctat
gaggcaggcaagaaggaccacgaggacttcttcacccctcagcagcatgacaagggcaaa
aagcctaagaaggacaagaagaataagaagtccaaacagccactgtacagcagcatcgtt
accattgaggcctccaagcccaacggccagcgctacgatggtgtcaacgagaagctgtcg
gacagccctgggatgggccgataccggtctgttaacggagggcccgggagcccggatctg
gcccggcactacaagtccagctcgccactgcccacagtccagctccacccccagtcaccc
acggccgggaaaaagcatcaggctgttcaggaccttccccctgccaacaccttcgttggc
accggagataacatttcccttggatctgaccactgctctgagtatagcagtcaaaccatc
aacaagtacaacaaacagccgttccgccgagtgaccttctcggtggtgagccagccccaa
gacccccaccagcagggatcgctgcagagctgctacgacagcgggctggaggagtcggag
acgcccagcagcaagggctcttcggggggcccaaggctgggtgcgctgcccctgcccgag
gacagctacgagaggaccacgccggatggcagtgtcggtgaggcagagcatatggaaaat
gacacccggcccttgcccgacgtagccatgacaggcaagtgcacccgggaatgcgatgaa
tacggccactctgactcctgctggatgcctgtgcgcacgtcgcctgagcgccggcccaag
acaaccacaacccaacaaccaaagctttccaccttcatgactggcggtggcagcggcagc
agccctcccgagcagcaccagcagcatcctggcagccaggaagccctggccgccatgtcc
aatggagacccctcctcccacgtgatgctgggcaatgaccgcaaccgcagcctgctcaac
aagaagacagcctcctcctcctcctcctacgagggctttggctcgcccagttttagccca
ccgggggttgaagagagggtggtgggtcaccccattgaggagatccctctggcccccacc
ggggagtacaagccctcaccctgcggcacgctcactcgccgggaggtctacctgtga
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