KEGG T10872: 139416229

Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416229

Entry

139416229         CDS       T10872

Name

(RefSeq) methyl-CpG-binding domain protein 4

K10801

methyl-CpG-binding domain protein 4 [EC:3.2.2.-]

Organism

ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)

Pathway

ocla03410

Base excision repair

Brite

KEGG Orthology (KO) [BR:ocla00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    139416229
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ocla03036]
    139416229
   03400 DNA repair and recombination proteins [BR:ocla03400]
    139416229
Chromosome and associated proteins [BR:ocla03036]
Eukaryotic type
  Heterochromatin formation proteins
   MBPs (metylated DNA binding proteins)
    139416229
DNA repair and recombination proteins [BR:ocla03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     139416229

SSDB

Motif

Pfam:

MBD HhH-GPD

Other DBs

NCBI-GeneID:

139416229

NCBI-ProteinID:

XP_071020750

LinkDB

Position

9:complement(35998369..36006072)

AA seq 848 aa
MYQAKTEPTVDTTCASPTDNNTVTTRLKNNDLNTENPVTDTHLNPNSDTDTMAVPGSDMR
VTKEADPNAVKRQRTRQEDEDSCPPSSMPPGWVRVVRRRKSGKTAGKMDIYITSPQGQRF
RSRASLQAFLLRDAGGDLQIDDFDFTKAKSGSVAVTPLPSQERQRKVNQKHTRHTSEANI
NEDRQNTEENMEEGRILSLPPNNTKIANSAKSCKQRTRPRDKRTIITHLRPDMPHLARGN
HRPAAGRGTETGQPSDTNEDIKETHIQASVRRGEDDETERRLKVVAVVDDVILEKSPQRR
PGLLREKLLRLAPPTDPQDALIGREEQLPVSLLLVPVLRVQSASESEGEAESEGVGVGET
EGVENIEAEVHDKELPSPQTTGERCTPLKDSQSKLLGEKRKTSPYFSRKSMRDGLSPPRR
KALRKWTPPRSPFHLVQETLFHDPWKLLVATVFLNKTSGKMAIPVLWQFFKLYPSAEETR
GAEWKPLSVLLRSLGLYELRAKIIIRFSDEYLTKQWRYPIELHGIGKYGNDSYRIFCVEE
WRQVEPQDHMLNKYHAWLWENHERRAPVHLATLGSSFILCLHTSNLIPRATVATAKHPMS
VVRRELSVKVKTEPLEVFQCTRTGLHCWGNTRHSPVYGMKLPAVCLNSTTLSIPRSIPVR
QSRYLMVTPLTLPIIISPASAALPVSQSVPRLDPLHPLAHRRTVSLETPAVHHHNHQRAL
VMQRKEHNRYHQVWRKPFYGSCTEREEYRSEVRQQLKRQMEEKRAGLMLKLTSKAEEAEF
LQEVDRLALSSEKQQRIQHSRAMSHYRDENKKLMEQSWMDRALIRSQEALMERELLRHNP
INWSGTLK

NT seq 2547 nt +upstreamnt +downstreamnt
atgtatcaggctaaaactgagcctactgttgatacaacctgtgcttcccctacggacaac
aacactgtcacaaccaggctcaaaaacaatgacctcaacacagagaaccccgtcactgac
acacatttgaatcctaactctgacacagacactatggctgttccaggttcagatatgaga
gttaccaaagaggctgatccgaatgcagtcaagagacagcggaccagacaggaagatgag
gattcgtgcccgccttctagtatgccgccgggctgggtgagagtagtgagacggaggaaa
agtgggaagactgcaggcaaaatggacatctatataacaagtccccagggacagaggttc
cggtccagggcgtctcttcaagctttccttctcagagatgcaggaggggatctacagata
gatgactttgacttcaccaaagccaagagtggcagtgtagctgtgactccgctgccaagc
caggagagacagaggaaagttaatcagaaacacacacgtcatacctcagaggccaatatc
aatgaagaccggcagaacacagaggagaatatggaagagggtagaatattaagcctgcct
ccaaataacacaaaaatagccaattccgcaaaatcctgcaagcagaggaccagacccaga
gacaagagaacgataataactcatctgaggcctgacatgcctcacctggcaagggggaat
cacagaccggcagctgggagaggcacagaaacgggccaaccatcagacacaaatgaagac
atcaaagagacacacatacaagcctctgtgagaaggggtgaggatgatgagactgagagg
cgtctgaaggtcgtggcggtagttgacgatgtcatactggagaagagcccccagaggagg
ccggggctgctgagagaaaagctgctcaggctggccccgcccactgatcctcaagatgct
ctcattggtcgagaagaacagcttcctgtgtcactgttacttgtcccagtccttagggtg
cagtctgcttctgagagcgagggggaggctgagtctgagggtgtgggagtgggggagact
gagggagtggagaatatagaggcagaggtgcatgacaaagagctgccatctccccagacc
actggagagcgctgtacaccactgaaagattcccagagcaaactgttaggagagaaacgg
aagaccagtccttatttcagccggaagtcaatgagagatggtctaagcccccccaggagg
aaagccttaaggaagtggacccctcctcgctctcccttccacctggtgcaggagaccctt
ttccacgacccttggaaactcctggtagccacggtgttcctcaacaaaaccagcggtaaa
atggccatcccggtgttgtggcagttctttaagctttacccatcagcggaggagaccagg
ggggcagagtggaagcccctgtctgtgctgctgagatctttgggcctgtatgaactgcga
gccaaaatcatcatcaggttctctgatgaatacctgaccaagcagtggcgctaccctata
gagctgcatgggattgggaagtatggaaatgactcctacaggatcttctgtgtagaggag
tggagacaggttgaaccccaggaccacatgctaaacaagtaccatgcttggctgtgggag
aaccatgagaggagagcaccagtgcatttagctacgctaggctccagctttattctctgt
ctgcacacgagtaacctgattcccagggcaaccgttgccaccgcaaaacacccaatgtca
gtagtaagaagagagcttagtgtaaaagttaagacagagcctttagaagtttttcaatgc
acaaggaccggactccactgctggggaaacacaaggcacagccctgtctatggaatgaaa
cttcctgctgtttgcttgaattccacaactctgtctattcctcgatccatacctgtccgc
caaagtcgctaccttatggtcactcccctgacattgcccatcatcatctcacctgcctct
gcagcactgccagtcagccagtctgtccccagactggaccccctccatcctctggctcat
agacggaccgtcagcctggagacccctgctgtgcatcaccacaaccaccagagggcactg
gttatgcagagaaaggagcacaataggtatcaccaggtgtggcggaagccattctacgga
tcctgcactgaaagagaggagtacagatcggaggtacgtcagcagctgaagaggcagatg
gaggagaagagggcggggctgatgctgaagttgaccagtaaggcagaggaggctgagttt
ttacaggaagtggatcgcttggctctgtccagtgagaaacagcagaggatccagcacagc
agagcgatgagccactacagagatgagaacaagaagctgatggagcagagctggatggac
agggcactgattcgctctcaggaggccctgatggagagagaactgctacgccacaacccc
attaattggagcggcacactgaaatag

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