Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416243
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Entry
139416243 CDS
T10872
Name
(RefSeq) RNA-binding protein 39-like isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139416243
Spliceosome [BR:
ocla03041
]
Common components
Common spliceosomal components
General mRNP proteins
139416243
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_7
RRM_5
Transformer
Motif
Other DBs
NCBI-GeneID:
139416243
NCBI-ProteinID:
XP_071020775
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All DBs
Position
9:37291970..37315452
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AA seq
514 aa
AA seq
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MADDFDVEAMLEAPYKKDEIKSSSANGNEERSSKKKKRSHRRSSRSLSSDKCYSKDGKKS
PEKKRSRSNERRRSGSRSREHAGRYRGRRGPFWKRSRSCSPFKKDKSPLRKPIDNLTPEE
RDAHTVFCMQLAARIKPRDLEDFFSAVGKVRDVRMISDRNSRRSKGIAYIEFLDVNSVPL
AIGLTGQRLLGVPIIVQAPQAEKNRAAAMANNLQKGNAGPMRLYVGSLHFNITEDMLRGV
FEPFGRIESIQLMNDSETGRSKGYGFISFADAECAKKALEQLNGFELAGRPMKVGHVTER
TDPSTASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSIHSTP
IHFVNMAAGTDIQASLNPPPEAPATLSLNLAPSMNQAMTLSTQPLATHCLQLSNMFNPQL
EKEPGWDVEIQDDVIEECNKHGGIVHIYLDKNSPQGNVYMKCPTIPTAMAVVNALHGRWF
AGKMITAAYVPFPTYHNLFPDSVTAAQLLMPVRQ
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgactttgatgttgaggctatgctagaggctccatacaaaaaggatgaaata
aagtcctctagtgctaatggaaatgaagagcgcagtagtaagaagaaaaagaggagccat
cgtaggagtagtcgcagcctgagctctgacaagtgctacagcaaagatgggaagaagagt
ccggagaagaaacgcagccgcagtaacgaacgccggcgcagtggttcccgtagcagggaa
catgctggacgctacagaggacgccggggacccttttggaaacgctcaagaagttgtagc
cccttcaagaaagacaagagtccattaaggaaaccaattgacaacctgaccccagaggag
agggatgcccacactgttttttgtatgcagctggcagccagaatcaaaccacgagaccta
gaggacttcttctcagccgtggggaaagtgagagacgtgaggatgatctctgacagaaac
tccaggaggtcaaagggcattgcctacattgagtttctggatgtgaattcagtcccgctg
gctattggcttaactggtcagagacttctaggagtgcccatcatcgtacaggcccctcag
gctgagaagaacagagctgcagcaatggccaacaaccttcagaagggtaatgctggccct
atgcggctgtatgtgggctctctacacttcaacatcacagaggacatgctgcgaggtgtc
ttcgagcctttcggaagaattgagagcatacaactgatgaatgacagtgaaactggacga
tccaaaggatatggtttcatctcatttgcagatgcagagtgcgctaagaaggccctggag
cagctgaatggctttgagctggccgggcggcccatgaaagttggtcacgtgacggaacgc
accgacccctccaccgccagctccttcctggacaacgacgagctggagaggacaggcatt
gacctgggcaccaccgggcgcctgcagctcatggcccggctggcagagggtactggtctt
cagatccccccggctgcacagcaggctctacagatgagtggttccatccactcgactcca
atccacttcgtcaacatggcagctggtacagacatacaagccagcctgaacccaccccct
gaagctcctgccaccctttcactgaatctggctccaagcatgaaccaggccatgaccctc
tcaacgcagccactggctacacactgcctacagctgtccaacatgttcaaccctcagttg
gaaaaggaacctggctgggatgtcgagattcaagatgacgtcattgaggagtgcaacaaa
cacggtggaattgtccacatataccttgacaagaactcccctcagggcaacgtgtacatg
aaatgcccgacaatcccaacagcaatggctgtagtgaatgcgctacatgggcggtggttt
gctggtaaaatgatcactgcagcgtacgtaccttttccgacctaccataacctttttcct
gattcggtaactgctgcccagttattgatgcctgtacggcaatga
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