Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416270
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Entry
139416270 CDS
T10872
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 1-like
KO
K05034
solute carrier family 6 (neurotransmitter transporter, GABA) member 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
139416270
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ocla02000
]
139416270
Transporters [BR:
ocla02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
139416270
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Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
139416270
NCBI-ProteinID:
XP_071020832
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Position
9:complement(39415293..39429292)
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AA seq
694 aa
AA seq
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MATNGTKTDGQVTELNEVATNDKPKSLDVKSDKTKKDLPERETWGGRFDFLLSCVGYAIG
LGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGMPLFLLETALGQYTSIGGLGVWKLAPVFK
GVGLAAAVLSFWLNIYYIVIIAWAIYYLYNSFTSELPWSSCGNSWNTEKCYSNYSIVDNT
NLTSAVMEFWERNMHQMTDGLEKPGQIRAPLAITLAIAWVLVYFCIWKGVSWTGKVVYFS
ATYPYFMLFILFCRGVTLPGAMDGILFYITPNFEKLKESEVWLDAATQIFFSYGLGLGSL
IALGSYNPFNNNVYRDSIIVCCINSFTSMFAGFVIFSIVGFMANVTKRPIEEVAASGPGL
AFLAYPEAVTQLPVSPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEFPRALRGRRELF
IAAVCLVSYLIGLSNITQGGLYVFKLFDYYSASGMCLLFLVFFECISISWFYGVNKFYDN
IQEMIGYKPCIWWKLCWVCFTPLIVAGVFLFSAVQMVPLTLNNYVFPAWGQGVGWLMALS
SMVLIPGYMVYMYLGLKGTWKERLRIMFQPPAVVRRPQENGPETVVAETNIASPSNAANP
SPSNPVSPANPTATSPVAAAPANPAPPAIPAMASPVNPTSPTVPTVPTVPATPANPTSPT
SPPPNPVSPTAKETAIPPPNIVSSTNLTNAEANV
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaacggcaccaaaacggatggacaagtaacagaacttaacgaagtggcaact
aatgacaaacccaagtcactggacgtgaaaagcgacaagacgaaaaaggatcttcccgaa
agagaaacctggggagggagattcgatttccttctgtcgtgtgtaggttatgcaattgga
ctcggaaacgtatggagatttccatatctctgtggaaaaaacggtggaggagccttcttg
atcccctattttttgacactcatattcgctgggatgccgctgttcctgcttgagaccgct
cttggtcaatacacttcaattggtgggcttggagtctggaaactggctcccgtgttcaaa
ggtgttggccttgcagcagctgtcctgtccttctggcttaatatttattacattgtcatc
attgcctgggccatatactatctctacaactcatttacctctgaacttccatggagctca
tgtggcaactcatggaacacagaaaaatgttactcaaactacagtattgttgataacacc
aatcttaccagcgcggtgatggagttttgggagcgcaacatgcatcaaatgaccgatggc
ttggaaaaaccagggcagatccgagcgccactggcaataacactggccatcgcttgggtc
ctggtttacttctgtatctggaaaggggtgagctggactggcaaggttgtgtacttctcg
gccacgtatccctatttcatgctattcattctgttctgccgtggagtgactctacctgga
gctatggatggcattctcttctatatcacccctaactttgaaaaactaaaagaatctgag
gtatggctggatgctgccactcagatatttttctcctacggtttgggactgggctcactg
atagctcttgggagctataacccttttaataataatgtttacagagactctatcatagtt
tgctgcatcaactccttcaccagcatgtttgctggctttgtcatcttctctattgtgggc
ttcatggcgaacgtgactaagaggcccatagaagaagttgcagcttcaggtccaggcctg
gctttcctggcctaccctgaggctgtgacccagctgcccgtctcccctctctgggctatc
ttgttcttctccatgctgctgatgctggggattgacagtcagttctgcacggtagagggc
tttatcacagctctggtggatgagtttcccagggcactgaggggcaggagagagctcttc
atcgctgctgtctgcctggtatcgtacctgatcggtctatccaacatcacacagggaggc
ctgtacgtgttcaaactcttcgactactactctgccagtgggatgtgtctcctcttcctg
gtcttcttcgagtgcatctccatatcctggttctatggtgtgaacaaattctatgacaac
atccaggagatgattggctacaagccctgtatctggtggaagttgtgctgggtttgtttc
acccctctcattgtggccggggtgttcttgttcagtgcagtccaaatggttcctctcacc
ttgaacaactacgtgttccctgcctggggccagggagtgggctggctcatggctctgtcc
tccatggtcctcatccctggatacatggtctacatgtacctcggactcaagggcacctgg
aaagagcgcctacggataatgttccagcctcctgcagtggtccgacggccacaggagaat
ggacctgagacagtggttgccgagaccaacattgctagtccctctaacgcggccaaccca
agtccatccaacccggttagtcctgccaatccaactgctacaagcccggttgctgcagcc
ccggccaacccagcacctccagccattccagctatggctagccctgtgaacccaactagt
ccgaccgttccaactgtccctaccgtccctgccactccagccaacccgaccagccctacc
agcccaccacccaatccggttagcccaacggcaaaagagacggccatcccaccacccaac
atagtgagctcaacaaacctgaccaacgctgaggcaaatgtctag
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