Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416284
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Entry
139416284 CDS
T10872
Name
(RefSeq) calcium-responsive transactivator-like isoform X1
KO
K15623
protein SSXT
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
139416284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139416284
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
139416284
GBAF(ncBAF) complex
139416284
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SSXT
Motif
Other DBs
NCBI-GeneID:
139416284
NCBI-ProteinID:
XP_071020859
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All DBs
Position
9:complement(39801204..39821548)
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AA seq
471 aa
AA seq
DB search
MSVAFSSARPRSKGEVTQQTIQKMLDENHHLIQCIMDYQSKGKTAECTQYQQILHRNLVY
LATIADSNQNMQSLLPAPPTPNMGSIGAGGMGQSGGRGPLHSQSNLNDTMTPGLPPTSML
QSQMSNGPSHAPMQQQAGQTQSAGPSSTSLSLPASTHGSASGYSHPVPPSSQGSMIQGLG
PDYGSSSSSSTSSRSNLNMQSNTVSMMHQQSATPHYPSTQTGGGQQQYQGQQAAMGMLGQ
SGQGNNMMSQRPMGTYRPTQQGSAPQYMGQDDFYGEQYGHTQSSSEPINQQYYSDGHGEY
SYQQSSYGEQGYERSFDESSQHYYEGGNSQYSQQQAQYQQGSGQQQPFSQQQYPSQQGYS
GQPQGYGPGQGAQSQYSQYQQGQGQQYSSYRSQASSGAQTQRPYAYEQVQLQLPPTPRFE
EDRAVQQNIGVNMETTSNKAPPPGQTGGQVRQGNSSVNNPQQSCVNQSLSK
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtggcattttcatcggcgcgcccaaggagcaaaggggaggtgacacagcaaacg
atacaaaagatgctggatgaaaatcaccatctgatacaatgcataatggattaccagagc
aaaggaaaaacagcagaatgcacacagtatcagcagatccttcacagaaacctagtctat
ctggccacgatagcagattctaatcagaacatgcagtcattgttacctgcacctcctacc
cctaacatggggagtataggtgctggaggaatgggacagagcggaggcagagggccccta
cactcccagagtaacctcaacgacaccatgacccctggcctgccccctacctctatgttg
cagagtcagatgagcaatggccccagccacgctcccatgcagcagcaggcgggtcagaca
cagtcggctgggccctcatccacgtccctcagcctgccagccagcacccacggctcagcc
tccggctacagccaccccgtgcccccctcctcccagggcagcatgatccagggccttggc
ccagactacggttcttcctcttcctcttctacctcctcccgcagcaacctcaacatgcag
tctaacacagtctccatgatgcaccagcagtcggcaacacctcattacccctcaacccag
actggtggcggacagcagcagtaccagggtcagcaggctgctatgggcatgttggggcag
agcggacaaggcaacaacatgatgagccagaggccgatggggacctaccgacccacacag
caaggatctgcaccgcagtacatgggacaagacgatttctacggagagcagtacggacac
actcagagctccagcgagcccataaaccagcagtattactctgatggtcatggggagtac
tcctaccaacaatcatcctacggtgaacagggctatgagaggtcctttgatgagtcctca
cagcactactacgaaggaggcaactcccagtacagtcagcagcaggcccagtaccagcag
gggtcaggccagcagcagcccttcagccaacaacagtacccctcacagcagggctacagc
ggacagccacagggctacggtccaggtcagggtgcgcagtcccagtactcccagtaccag
cagggtcagggccagcagtacagctcctaccgctcccaggcttcctctggggcacagaca
cagaggccctacgcctacgaacaggtacaactacagctacccccaaccccacgttttgag
gaggaccgtgctgtccaacaaaacattggggtcaatatggaaactaccagcaataaggca
ccacctcctgggcaaactggtggacaagttaggcaagggaacagttctgtgaataacccc
caacagtcgtgtgtaaaccagtctctgagtaaatga
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