Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416313
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Entry
139416313 CDS
T10872
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
Brite
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139416313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
139416313
NCBI-ProteinID:
XP_071020913
LinkDB
All DBs
Position
9:41543896..41572847
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AA seq
1489 aa
AA seq
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MFSFVDSRTVLLLVASQVVLISIVRCQEEDDQEAGSCIQDAQRYNDKDVWKPEPCRICVC
DSGSVLCDEIICEEIRECANPIIQPRECCPICPADASAPTEAVIGAKGQKGEPGEIADVV
GPNGPAGPMGPSGEQGPRGEAGAKGDKGNVGPRGRDGEPGTPGNPGTPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPA
GALGPQGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLD
GSKGEGGAAGAKGEGGAPGENGAPGPMGPRGLPGERGRPGASGSAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGSKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGASGNPGTDGIP
GAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPI
GPQGGPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVP
GVGGPKGGTGDPGRAGEPGLPGARGLTGRPGDAGPQGKVGSGGAAGEDGRPGPPGPQGAR
GQPGVMGFPGPKGANGVPGKAGEKGLVGRQGLIGLSGKDGETGAAGPNGPAGPAGERGEQ
GAAGPSGFQGLPGPAGPPGEGGKPGDAGVPGEAGAAGVTGPRGERGFPGERGGAGSQGLQ
GPRGLPGTPGTDGPKGAIGPTGGAGSQGPPGLQGMPGERGAGGILGAKGDRGDNGEKGPE
GAPGKDGSRGLSGPIGPPGPAGPNGVKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFA
GPPGADGQPGAKGEFGEAGQKGDGGAPGPQGPSGAPGPVGPTGVSGSKGGRGAQGGAGAT
GFPGAAGRVGSPGPNGNPGAAGPAGPAGKDGPKGVRGDAGTPGRQGDAGLRGVAGAPGEK
GDAGEDGPPGPDGPSGPHGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGAGGDR
GPPGPVGPPGLSGPAGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAP
GPVGPLGKQGDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFT
GLQGLPGPPGSAGDQGAAGPAGPSGAKGPPGPAGPAGKDGSNGTPGPLGPSGPRGRSGET
GAAGPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVD
STLKSLNYQIENLRSPDGSQKNPARTCRDIKLSHPEWKSGNYWVDPNIGSTADAIKVFCN
METGETCVYPSIANVPHKNWWTSKSKDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFL
RLLSTEASQSLTYHCKNSVAYMDASTGNLKKALLLQGSNDVEIRAEGNSRFTYSVAEDGC
KKHTGQWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcacggactgttctgctacttgtagcatcccaagttgtttta
atatccattgtcagatgccaggaagaggatgaccaggaggcaggcagctgcatccaggat
gcccaacgctataacgataaggatgtgtggaagccggagccgtgtcgtatctgtgtgtgt
gacagcgggtcagtgctgtgtgatgagatcatctgcgaggagatcagagagtgtgccaac
cccatcatccaacctagagagtgctgccccatctgccctgcggacgccagcgccccaact
gaggcggtgattggtgctaagggccagaaaggggaaccaggcgagattgcagatgttgta
ggaccgaatggaccagcaggccctatgggcccctcgggcgagcagggaccacgtggagaa
gctggcgctaagggtgataagggaaatgttggccccagaggcagagatggcgagcctgga
acccccgggaaccccggaacccctggccctcccggacccaacggacccccaggtcttggc
gggaacttcgcggctcagatggctggtggattcgatgagaaagccggaggcgcacagatg
ggagtgatgcaaggacctatgggccctatgggtccccgtggtccacctggcccttctgga
gcccctggcccacaaggtttccaaggtaaccccggagagactggagagccaggccctgct
ggtgcactgggaccccaaggaccccctggaccttctggcaaaccaggaagtgatggtgag
gctggcaaacctggaaaggctggtgaacgtggacctgcaggacctcagggagctcgtgga
ttccccgggactcctggtcttcccggaatcaaaggacacagaggtcatcctggtcttgat
ggatctaagggagagggtggtgctgctggagccaagggcgagggtggcgctcccggagag
aacggcgcccctggaccaatgggaccacgtggtctgcctggcgagagaggccgtcccgga
gcttctggctctgctggtgcccgtggtaatgatggcttgcctggccctgctggtccccct
gggcctgttggacctgctggagcacctggtttccctggatcccctggctccaagggagaa
gctggccccactggtgcccgtggagctgagggcgcacagggaccccgcggagaggctggc
acacccggatctcccggtcccgctggcgcctctggcaaccctggtactgatggtatcccc
ggagctaaaggatctgctggtgcttctggtattgctggtgcacctggtttcccaggaccc
cgtggcccccccggacctcagggagcaacaggacctcttgggcccaagggccagtcggga
gaccccggtattcctggtttcaaaggagaggctggacccaagggagagcttggccctatt
ggtccccaaggcggccctggccccgctggcgaggagggcaaacgaggagcaagaggagag
cctggtgctgctggaccacttggacctcctggcgagagaggagctcccggtaaccgtggt
ttcccgggtcaggacggtcttgctggtgctaagggagcccctggtgaccgtggtgttccc
ggcgtgggtgggcctaagggaggcactggtgaccccggccgcgcaggagagcctggtctt
cccggagccagaggtctcactggtcgccccggagatgctggtcctcaaggcaaagttggc
tctggtggtgctgctggtgaggacggtcgccccggcccacctggtcctcagggagcacgt
ggccagcctggtgtgatgggattccccggaccaaagggagccaatggtgtgcctggcaag
gcaggagagaagggtctcgtgggtcgtcaaggtctgataggtctgtctggtaaagatggt
gagactggcgctgctggacctaacggccctgctggacctgctggagagagaggagagcag
ggagctgctgggccatctggcttccagggtctgcctggacctgctggccccccgggagag
ggaggcaagcctggtgatgcgggtgttcctggagaggctggtgctgcaggcgttacggga
cccagaggcgagcgtggtttccctggtgagaggggcggcgcaggatctcagggtctgcag
ggacctcgtggacttcctggaactcctggaactgatggacccaagggagccattgggcca
actggtggtgctggatctcagggaccccccggcctgcagggtatgccaggagagagagga
gctggtggtatccttggagccaaaggtgacagaggtgacaacggcgagaaaggacctgag
ggcgctcctggaaaggatggttccagaggcttgtctggtcccattggtcctcctggccca
gctggtcccaacggcgtgaagggtgagggtggaccttctggcccaactggtgcggctggt
gcccgtggtgctcctggtgaccgtggtgagggtggtcctcctgggcctgctggcttcgct
gggcctcctggtgcagatggtcagcctggagccaagggagagtttggcgaggctggacag
aagggagatggtggtgcccctggacctcagggaccctctggggcccctggacctgtgggt
cccactggtgtttctggatctaaaggaggccgcggtgcccagggtggcgctggtgctact
ggtttccctggtgctgctggaagagttggatctcccggtcccaatggtaaccctggtgct
gctggccccgctggtcctgctggtaaagacggtcctaagggagttcgcggtgacgctggc
accccaggaagacagggagatgccgggctgcgtggagttgctggagcccctggcgagaag
ggagatgctggcgaagacggcccccctggccctgatggtccttcaggtccccatggtctg
gctgggtctcgtggtattgttggtctgcctgggcagcgtggagagaggggcttccctggt
cttcctggaccgtctggagagcccggtaagcagggagcttctggtgctggtggtgaccgt
ggaccgcctggccctgtgggaccccctggactgtctggacctgcaggagagcccggaaga
gagggcaacgctggatctgatggaccccctggtagagatggatccactggagtcaagggt
gagcgtggtaacactggtcctgctggtgctcctggtgccccgggcgctcccggtgccccc
ggccctgtcggccccctgggcaagcagggagacagaggagagggaggtgctcaaggacct
gccggacccgctggaccagctggcgctagaggaatggctggaccccaaggaccccgtgga
gacaagggagaggctggcgagacaggagagaggggacagaagggacaccgtggcttcacc
ggtctgcagggtcttcccggacctcccggctccgctggagaccagggagctgctggacct
gccggacctagtggcgctaaaggaccccctggcccagccggtcccgctggtaaggatgga
tctaacggtaccccaggacccctcggaccctctgggcctcgtggtcgttctggagagact
ggtgctgctggtcctcctggtaaccccggaccccctggtcctcctggtcctcccggccct
ggcatcgacatgtctgccttcgctggcctgtctcagccagagaagtctccggatcccctg
aggtacatgagggctgatgaggcatcaagctccctgaggcagcacgacgtggaggtggac
tccacactcaagtccctcaactaccagatcgagaacctgcgcagccccgacggtagccag
aagaaccccgcccgcacctgcagagacatcaaactgtcccaccccgaatggaagagtggt
aactactgggtggacccgaacattggcagcacagctgacgccatcaaggtcttctgcaac
atggagaccggcgagacctgcgtgtaccccagcatagccaacgtgccgcacaagaactgg
tggacaagcaagagcaaggaccgcaaacacgtctggttcggagagaccatgaatggagga
ttccacttcagctacgctgaggacggtaccaacgccgccagtatccagctgaccttcctg
aggctgctgtccacggaagcgtctcagagcctcacctaccactgcaagaacagcgtggcc
tatatggacgcatccacgggcaacctgaagaaggctctgctgctccagggctccaacgac
gtggagatccgagctgagggcaacagccgcttcacctacagcgtggcggaggacggctgc
aagaaacacacaggccagtggggcaagactgtcttcgagtacaaaacacagaagacctcc
cgtctgcccatcgtggacattgctcctatggacatcggaggagcggaccaggagtttggc
gtggacgtgggcgcagtctgcttcttgtaa
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