Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416356
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Entry
139416356 CDS
T10872
Name
(RefSeq) sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3H
KO
K06840
semaphorin 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
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Gene cluster
GFIT
Motif
Pfam:
Sema
Ig_2
Ig_3
V-set
PSI
ig
Ig_6
I-set
Motif
Other DBs
NCBI-GeneID:
139416356
NCBI-ProteinID:
XP_071020986
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Position
9:complement(42943804..42971473)
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AA seq
781 aa
AA seq
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MLGTLSVCVCETMWRFATLFLLAHLGRNLTGAWRASLPRLQFTHSELVQNGRLLSLPLAA
GDMHSLLPDEDGRRLYVAMKDNLLSTSLDDITQNPSKLYWPASPDRVQECLMAGKDRELE
CANFLRVLQPYNQTHLYVCGTGAFNPRCAFIPTTVFLKSERQTLSFGQTECGKGKCPYDP
HQRTASAIIDGELYAGISSDFMSRDSAFFRSLGSRHVIRTEQYDSSWLQNAQFVKVAWMA
ETDNPEDDKVYVFFTERAQEAEGAAGKVLYSRVARVCKNDIGGQRSLVNKWSTFQKARIV
CSIPGSDGIQTHFDQLQDIFILHDGKDKKNPLIYGLFTTSSDILNGSAVCVYRMQDVVRA
YKGNFYHKEGPQYKWAEYTGKIPYPRPGTCPSSTYGSYSSTREYPDDVIFFSRTHPLLQE
AVLPLGGHPLLVRVGVHYKFSRLLVERVEAVDGQYDVLFIGTDSGQVLKSIHLPKEHGVP
QEVTLEQLQVFQHKSPVTTMTLSKKKQWLFVGSAEGVAQLALFQCELYGQACAECCLARD
PYCTWDGHACSPFMPIARRRNARQVGDEEDPLTQCVIQGAGLQVEAEQRMMMVAEGNSTY
LECLPKSRHAAVTWYKQAGENSPELNQLQSGEQLVVTERGVLISRAETGHSGVYHCQLEE
HGFHWTAVTVHLSVWSPSRALSWSTSNRNPNSSPDASQPWYQDVMALIHPSSLEQHCQRL
GFRRRRNRGQDQTKDSDHKTGDGPRGERHKHEGRGGGGGGGGRGGGRKSRSKPKQRSPRS
S
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgctcgggactttgagtgtgtgcgtgtgtgagaccatgtggaggttcgcgaccttgttc
cttctagcccacctggggcgcaatctgacaggggcatggagagcctccctgccgcgcctg
cagttcactcactcagagctggtccagaatggccgtctcctatccctgcccctggcggcg
ggggacatgcactctctgctgccagatgaagatggccgtcggctctacgtggccatgaag
gacaacctgctgtccaccagcctggacgacatcacacagaaccccagcaagctctactgg
ccagcaagtccagaccgggtccaagagtgtttgatggctggaaaggaccgggagttggag
tgcgctaatttcctgcgagtgctgcagccctacaaccagacccacctgtatgtgtgtgga
acgggagccttcaaccctcgctgtgccttcatccctaccaccgtcttcctcaagtcggag
cgacaaactctatcatttggacagactgaatgcgggaagggaaagtgtccatacgatccc
caccagagaactgcctccgccattattgatggggagctgtatgctgggatctcatctgac
ttcatgagtcgagactcggccttcttccgcagcctgggcagtcgtcatgtgatccgcacc
gagcagtacgattcctcctggctgcagaatgcccagtttgttaaggtggcctggatggcg
gagactgataacccagaggatgataaggtgtacgtgttcttcactgagcgcgctcaggag
gcagagggggctgctgggaaggtgctgtactccagagtggcgcgtgtttgcaagaatgac
atcgggggccagcggagtctggtgaacaagtggagcaccttccagaaggcacgtatcgtg
tgctctatccctggatccgacgggatacagactcactttgaccaactacaggacatcttt
atcctccatgatggaaaggacaagaagaaccctctgatctacggcctcttcaccacatct
agtgacattctgaatggctcagcggtgtgtgtgtaccgcatgcaggacgtggtccgggca
tacaaaggaaacttctaccacaaggagggaccacagtacaagtgggccgagtacacagga
aagatcccctacccaagacctggcacatgtcccagcagcacatacggtagttacagctct
acccgggagtaccccgatgacgtcatcttcttcagccgtacccaccctctgctgcaggag
gcggtgcttccgctgggagggcaccccttgttggtcagggtgggagtgcactacaagttc
agccggctgctggtggaacgagtagaggcagtggatggacagtatgacgtcctgttcatc
ggcacagactccggccaggtgctgaagtctatccacctccctaaagaacacggtgtcccc
caggaggtcaccctggagcagctgcaggtcttccagcacaagtcacctgtgacgaccatg
acactgtccaagaaaaagcagtggctgtttgtgggttctgcagagggtgtggcccagttg
gctctgttccagtgtgagttgtacggccaggcctgtgctgagtgctgcctggccagagat
ccctactgcacctgggatggacacgcctgcagccccttcatgcccatcgcacgcaggagg
aacgctcgtcaggttggtgatgaggaggatcccctaacccagtgtgtcatacaaggagcc
ggtctgcaggtggaagcagaacagaggatgatgatggttgcagagggtaacagcacatac
ctggagtgcctgcccaaatccagacatgcggccgtgacctggtacaaacaggcaggagag
aacagccctgagctgaatcagttgcagtcgggagagcagctggtggtgacagagagaggt
gttctgatcagtcgggccgagacgggtcactctggtgtgtaccactgtcaactggaggag
cacggcttccactggaccgccgtcactgtgcatctgagtgtgtggagcccctcccgtgcc
ctctcctggtccaccagcaaccgcaaccccaactccagcccagacgcctcccaaccctgg
taccaggacgtcatggccctcatccaccccagcagcctggagcagcactgtcagaggctg
ggcttccggcgacgacgcaaccgcggccaggatcagaccaaggacagtgaccacaagaca
ggggatggccccaggggcgagaggcacaaacatgaaggcagaggaggaggtggaggagga
ggaggaagaggaggcgggaggaagagcaggagcaaacccaagcagaggtctccgcgaagc
tcttag
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