Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416479
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Entry
139416479 CDS
T10872
Name
(RefSeq) partitioning defective 6 homolog beta-like
KO
K06093
partitioning defective protein 6
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04144
Endocytosis
ocla04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
139416479
09144 Cellular community - eukaryotes
04530 Tight junction
139416479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139416479
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Centrosome formation proteins
Pericentriolar materials (PCM)
Centriolar satellite
139416479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PB1
PDZ
PDZ_6
Motif
Other DBs
NCBI-GeneID:
139416479
NCBI-ProteinID:
XP_071021214
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Position
9:complement(50327942..50367253)
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AA seq
390 aa
AA seq
DB search
MNKHHRVPSNRTLSSVEVKSKFGAEFRRFSLDRSKPGRFDEFYGLLQHVHRIPNVDLLVG
YADVHGDLLPINNNDNYHKAISVASPLLRLFLQRKEEADYSAFGTDSLTRPKKTVLAAVL
LRPDANRKKPPVIISLPRDFRPVSSIIDVDILPETHRRVRLYKHGQEKPLGFYIRDGSSV
RVTPQGLEKVPGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVQGKSLDQVTDMMIANS
HNLIVTVKPANQRNNIIRSSGGGGGGGAASGSSGRSSDSGASFYGYFTPGAAIATTPAHI
IQNFHPEELESDEDDEDLVIEADGEALPIPRAASASCSMPSLPRYEPHLNLRSTANGALA
SSTGSLSTVSTPDRGLEGRSLEEDGTLITL
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagcaccaccgagtgccgagcaaccgaactctgagctccgtggaggtgaagagc
aagtttggggccgaattccgtcggttctccctggaccggtcgaagccgggcagatttgat
gagttctatggactcctgcagcacgtgcaccggatacccaacgtggacctgctggtgggt
tacgccgacgtccacggcgacctgttgccaataaacaacaatgacaactaccacaaggcc
atctctgtggctagcccgctgctacggctcttcctgcagaggaaagaggaagcagactac
tctgcgtttggtacggactctctgacccgtcctaagaagactgtcctagctgccgtgtta
ctgcggcctgatgccaaccggaagaagccccctgtgatcattagcctgcccagggacttc
aggcctgtctcctccatcattgatgtggacatcctccctgagacacaccgccgggtgcgc
ctctacaagcacggccaggagaaaccattgggtttctacatccgcgacggctccagcgtc
cgggtcacaccccagggtctggagaaggttcctgggatcttcatctcccgcatggtgcct
gggggcctagctgagagcactggcctgctggccgtcaacgacgaggtgctcgaggtcaac
ggcatcgaggttcaaggcaagtctctggaccaggtgactgacatgatgatcgccaacagc
cacaacctcattgtgacggtgaagccagccaaccagcgcaacaacatcatacggagcagt
ggcggagggggtgggggtggggctgcttccgggagttcgggtcgctcttccgacagcggc
gcaagtttctacggctatttcacccctggtgctgccatagcgacgaccccggcacacatc
atccagaacttccacccagaggagctagaaagtgatgaggatgatgaggacctggtgatc
gaggcagacggggaggccttgcccatcccacgggcagcctcggccagctgcagcatgccc
tccctgccccgctacgagccccacctgaacctccgctccacagccaacggagccctggcc
tccagcaccggttcactgagcacggtcagcacgcccgacaggggcctagaaggaaggagc
cttgaggaggacggcacactcatcacactgtag
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