Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416524
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Entry
139416524 CDS
T10872
Name
(RefSeq) contactin-3
KO
K06761
contactin 3/4/5/6
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139416524
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
ocla00537
]
139416524
Cell adhesion molecules [BR:
ocla04515
]
Immunoglobulin superfamily
Contactins
139416524
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
ocla00537
]
Others
139416524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_DSCAM-DSCAML_C
V-set_CD47
Ig_4
Pur_ac_phosph_N
Interfer-bind
NDNF
Motif
Other DBs
NCBI-GeneID:
139416524
NCBI-ProteinID:
XP_071021328
LinkDB
All DBs
Position
9:52769165..52831537
Genome browser
AA seq
1025 aa
AA seq
DB search
MTLPWKQLLLLSIIDCLAEFLDSGSFHGPRWRMEPGDLFIPVDSMEEEATLTCDAKGIPP
PQYRWSLNGTLINLELDHRRRLSGGNLIIRSLDRYQDGGRYQCTAYNTIGAVLSRRASLQ
FAYLDHFKLHTRSAVSVREGQGVVLLCGTPTSSGDLSYSWVFNEYPYFVQQDNRRFVSQE
TGNLYIAKVEPSDVGNYTCVVMNSITKGKVHSSPTSLVLRKDGVMGEYEPKIEVHFPDTV
PAAKGSVVTLECFALGNPVPEITWKRANGVPFPSKVKMKYSNAVLEIPSFQQDDTGGYEC
VAENKMGKNIATGRLAFHAKPQWIQTMRDTALAIEERLHWECRANGKPKPSYNWLKNGQV
LITEERVYVDNGVLLISSLNLSDAGMYQCVAENKYGVIYFSTELMVLASSPDFTGNLLRA
LLKAKAGTIVTLECKPQAYPTASILWKKGNQPIHTNDRITLSPGGTLRITNVTKYDAGSY
TCFARNRFGTSSTTGRLLITDPTRITQGPVGMEIIVGESIVLPCQIACDPVLDVFFTWAF
NGQLITKTDRHFELVGGRTAGDLMIRNIQLNHAGKYICVVDTDVESLSAVAILIVKGPPG
PPDTVAVEEVTDSTAQLSWSRGRDNGSPITSYLIQTRTPFTVGWQRVDTVPEVIDGNTLT
ATVVDLNAWVEYEFRVVAKNSVGVGEPSPTSLQTRTEDAVPDAAPTDVGGGGGSRSELVV
TWEPVPEELQNGESFGYIIAFRGLGEMTWTHVATSAPGASRYVYRNDSIAPFSPFHVKVG
AYNSKGQGPFSPVVTIYSAEEEPSGMPGGVWARSVSASEIEVNWQALSFTPERVLGYEVV
YWEDDTKPETMGKVRVPGSQTSVTVSGLGRNTQYFLTVSAFNTAGTGPFLPAINATTKKS
PPRQPPLNVEWTLIGSQITIYWEPVVAMETESEVTGYQLSYRSLKHKEENMLLTNNSTAE
LTLVDNEDYVIHIRSLSEGGLGPATDPIRIHKLSMSARGSKAWSLNTSPVSLLLSIAFST
FRSTS
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgacgttaccatggaaacagcttcttctgctatcaatcatcgactgtctcgcagaattt
ttggacagtggatcattccatggtccaagatggaggatggaacccggtgacttgtttatc
cctgttgattctatggaagaggaggccactcttacatgtgacgctaaaggaatcccccct
cctcaatacagatggtcactgaatggaactctcataaatctggagttggaccaccggcgt
cggttgtctgggggcaacctcatcataagaagtctggaccgctaccaggatgggggaagg
tatcagtgtacagcctataacacaataggagccgttctcagcagaagagcaagcctacag
tttgcctacttggatcattttaaactccacacaagaagtgcggtgtcagttcgagaagga
caaggagttgtgttactctgtggaacacccacgtcctcaggagaccttagttattcatgg
gtcttcaatgaatacccatacttcgtccagcaagacaaccggcgcttcgtatctcaggag
actggcaacctgtacatcgccaaagtggagccctcagatgtgggcaactatacctgtgtg
gtgatgaacagcatcacaaagggcaaagttcacagctcacccacatctctggtcctgagg
aaagacggagtaatgggagaatacgagccgaaaatagaagttcatttccccgacaccgta
ccagcagcaaaaggatcagtggttacgctggagtgttttgctcttgggaaccctgtccct
gagattacttggaagagggctaatggagtcccgttccccagcaaagtgaagatgaagtac
tccaatgccgtcttggagatccccagcttccaacaagacgacacggggggctatgagtgt
gtggccgaaaacaagatggggaaaaacatcgctacaggccgattggccttccatgccaaa
cctcagtggattcagaccatgagagacacagccctggccatagaggagaggcttcactgg
gagtgcagggccaacgggaagcccaaaccctcctacaactggctgaaaaatggtcaagtg
ctgatcactgaggagagggtctacgttgacaatggggtcctgttgatctcgtctttgaac
ctgtctgatgccgggatgtaccagtgtgtggctgagaataaatatggtgtcatctatttc
agcactgagctcatggtcttagcctcttctccagacttcactggtaacctgctcagagcc
ctgcttaaagccaaggccggcaccatagtgactctagagtgtaagccccaagcctacccc
accgctagcatcctgtggaagaaaggcaaccaacccatccataccaatgacagaatcact
ctctctccaggtggaactttgagaatcactaatgtgaccaagtatgatgcaggcagctac
acctgctttgccagaaaccgatttgggacctccagcaccactggaagactcctcatcaca
gatccaacaagaattactcaggggccagtgggcatggagatcatagtgggtgagagcatc
gtgctgccctgccagatcgcctgtgaccctgtccttgatgtcttcttcacctgggctttc
aacggacagctcatcaccaagacagacaggcattttgagctagtgggagggagaacagct
ggggatctgatgatcagaaacatccagttgaatcatgccgggaagtacatctgcgtggtg
gacacagacgtggagagcctttcagcagtggccatattgattgtaaaaggcccccctggc
cctccagacacagtggcagtggaggaggtgacggacagcacagcacagctctcatggagc
cgcggcagggataacggcagccccatcaccagctacctcatccagaccaggacccccttc
actgtgggctggcagagggtggacacagttcctgaggtaattgatggcaacacactgaca
gccacggtggtggatctcaatgcctgggtggagtacgagtttcgagttgtggcaaagaac
agtgtgggagtgggcgagcccagtcccacctccctccagacacggacagaggatgcagtt
cctgatgctgcacccactgatgttggaggagggggcggcagcagatcagagttggttgtt
acatgggagcctgttcccgaggaactgcagaacggtgagagcttcggttacattatcgcg
ttccgtggcctcggtgagatgacctggacccacgtcgccacctctgctccaggggcatcc
cgctatgtgtaccggaacgacagcatcgctcccttctcacccttccacgtgaaggtggga
gcctataacagcaaagggcagggcccgttcagtcccgtggtcaccatctactctgcagag
gaagagccgagtggtatgccagggggagtttgggccagaagtgtttccgcctcagaaatt
gaagtgaattggcaggctctatcctttactcctgaaagagttctcggctacgaggtggtg
tactgggaggatgacaccaagccagagacgatggggaaagtgagggtacctgggagtcaa
acatcggtcactgttagtggcttagggcgaaacactcagtattttctcacagtcagcgct
ttcaacacagctggtactggccctttcctccccgccatcaacgccaccaccaagaaatca
ccacccagacaacctcctctaaatgttgagtggaccttgattggctcccagatcactata
tactgggagccggtggtagccatggaaacagagtcagaggtcaccggttaccaactgtct
tacaggagtctgaaacataaggaagagaacatgctcttgacaaacaattccacagccgag
ctgaccctcgttgacaatgaagactatgtcatccacataaggtcgctgagcgagggaggg
cttggcccagccacagatcccatccgcatccacaaactaagtatgagtgctcgaggctcg
aaggcctggagtctgaacacatcccctgtctctctgctcctcagcatcgcattttcaaca
ttcaggtctacatcgtga
DBGET
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