Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416539
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Entry
139416539 CDS
T10872
Name
(RefSeq) ubiquitin conjugation factor E4 B isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04120
Ubiquitin mediated proteolysis
ocla04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
139416539
04120 Ubiquitin mediated proteolysis
139416539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139416539
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139416539
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
U-box type E3
139416539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
139416539
NCBI-ProteinID:
XP_071021381
LinkDB
All DBs
Position
9:complement(53632264..53678271)
Genome browser
AA seq
1379 aa
AA seq
DB search
MEELSADEIRRRRLARLAGGQTSQPSTPLSTPLTSPQRETPPWPLPGTSGATPQPLPPAA
SHSLGLNVQSVTPATSPIGASGVTYCSQSSEGVSSLSSSPSNSLETQSQSLSRSQSMDID
TASCEKSSMSQVDVDSGIENMEVEDSDRREKRDLAEKESAENSDVSEEQALQLICKILRV
SWKEQDRDVIFLPLLAAEFHQSSLKDVFSDFKDLIGQILMEVLLMSTQLHVHNPFASLTA
TSEPIAAAKSLDHHLTLIQPSSQGSSPMAPCAGSFGASSLSSLYGCSPHSLALNAARMIS
PPLPTPTSPSLHPMVAPSPPSMAYPPRLSLNLPSAPLPISQRYRPYSVTSPLGISTPPSP
RLASLPGLSRGPITEGLPVPPIILAQAPAPPLPTSPQSVPLPSTSPHPPTSMPLPLVPPS
PRSATRGAALDTRIPSSPLSLLFFALSDMSQDSSEEEPEDEQEEDFTQVQFGSSLGVSGG
GMAWESCGDRFTIEACKETEMLNYLIERFDSVGMEEKKAPKICSHPSVSQLLSNIRSQCI
SHAVLVLQGALTQPRSPLQQSLLVPYMLCRNLPYGFIQELARITYQEEEVFRQIFVPILQ
GLGLAVKECSFDSDNFKFPLMALAELCEIKFVKTHPMCNLMTSLPLWCPKSLSPGTGREV
QRLSFLGAFFSLSVFAEDDSKVGDKYFSGPAITTENTRVVSQSLQHYLESARGEMFKILH
NILLNGETREVALNYMAALVNRNVKKAQMQTDDKLVSTDGFMINFLSVLQQLSMKIKLET
VDPYYIFHPHCRLHVSPEETRLKATMEELKTWLAEMYNDPSKFSEPKFPTECFFLTLHTH
HLSILPGCRRYIRRLRAIRELNRTVEELKNSESQWKDSPLASRHREMLKRCKTQLKKLVR
SKACADAGLLDENLLRRCLQFYSMVIQLILRMVDPAYPHMSLPLNPEVPKSFAALPEFYI
EDVAEFLLFVVQYSPQVLYEPCVQDIVTFLVVFICSQNYIRNPYLIAKLVEVLFVTNPAV
QLRTQRFSEMMENHPLSVKQLVPALMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQ
NMGHHGTFLEEFNSGKQFVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLP
REQQQSRQSQLTQDERVSRSYLALATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNL
QQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCARFAKAIADDQRSYSQELFEE
VISKMTKAGIKSTIAIEKFKLLSEKVEEIVARNSQSEMDYSDAPDEFKDPLMDTLMTDPV
ILPSGNIMDRAIILRHLLNSPTDPFNRQPLNESMLESLPELKERIQAWMREKQGQGRFL
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggaggagttgagtgccgacgagatccgcagaaggagactggccagacttgcaggaggg
caaacatcccagcccagcacccccctcagcactcccctgacgtccccacagagagagacc
cccccttggccccttcctgggacctcaggggccacaccccagcccctaccaccagccgcc
tcacattcacttgggctcaatgtccagagtgtcacccccgccacctctcctattggcgca
tctggggtgacgtactgcagtcagagcagcgagggagtgagctccctctccagctctccc
tccaacagcctggagacccagtcccagagtctttcccgatcccagagcatggacattgac
acagcctcctgtgaaaagagcagcatgtcccaggtggatgtggactcagggatagagaac
atggaggtggaggacagtgatcgcagggagaagagggacctggctgaaaaggaatccgct
gagaactcagatgtctctgaagagcaggctctgcagctcatctgtaagatcctacgtgtt
tcctggaaggagcaggacagagacgtcatttttctccccttgctcgccgccgagttccac
cagagcagcctcaaagacgtcttctctgacttcaaagacctgattggccagatcctgatg
gaggtgctcctgatgtctacccagttgcacgtccacaacccctttgccagcctgactgcc
acgtccgagccaattgctgctgccaaatctcttgaccaccacctgacgctgatccagccc
tccagccagggcagcagtcccatggccccctgtgcaggctcgtttggggccagctctttg
tccagcctgtacgggtgtagtccgcactcgctggctttgaatgcagccaggatgatctct
ccacctctacccacccccaccagcccatccctgcatccaatggtagccccaagtccccct
tccatggcctacccccctaggctctctctcaacctcccttccgcccctctgcctatctcc
cagcgctaccggccctactctgtcacctctcccttggggatctccaccccccctagcccc
agactggctagcctccctgggctttcacgcggccctatcactgaaggtctcccggtaccg
cccatcattctggcccaggccccggccccgccactaccaactagcccccagtcggttccc
ctcccctctactagtcctcatccgcccacctccatgcccctccctctggtacccccatca
cccagatcagctacccgaggagctgccctcgacacccggatcccgtctagccccctatcc
ctcctgttctttgccctctctgatatgtctcaggacagcagcgaagaagagcctgaggat
gagcaggaggaagattttacgcaggtccagtttgggtccagtctcggtgtgtccggaggg
ggaatggcctgggaatcctgcggcgaccggttcaccatcgaagcgtgcaaggagacagag
atgctcaactacctcatcgagcgctttgacagtgtgggcatggaggaaaagaaggcgccc
aagatttgcagccaccccagtgtcagccagctcctcagcaacatacgctcacagtgtatt
tcccacgccgttcttgtccttcagggtgccctcacgcagcccaggagtcctctgcagcag
tccctgctggtaccctacatgctgtgccgtaacctgccatatggttttatccaggagctg
gcccgcattacctaccaggaggaggaggtcttcagacagatctttgttccaatccttcaa
gggctgggtctggctgtgaaagaatgttccttcgacagtgacaacttcaaattccccctg
atggcattagctgagctatgtgaaatcaagtttgtgaagactcaccccatgtgcaatttg
atgacgtctttgcccctgtggtgtcctaagtctctgagcccggggactggccgagaagtc
cagagactctccttcctgggagccttcttcagcctgtcggtctttgcagaggatgactcc
aaagttggtgacaagtacttctcaggccctgcgatcaccacagagaacactcgcgtggtc
agtcaatccctgcagcactacctggagtcagcccggggtgaaatgtttaaaatcctccac
aacatcctactgaatggagagacacgagaggtagctctcaactacatggcagctctggtc
aaccgcaatgtgaagaaagcccagatgcagacggacgacaagctggtgtccacagatggc
ttcatgatcaacttcctgtcggtgctgcagcagctgagcatgaagatcaagctggagacg
gtggacccctattatatattccacccccactgccgcctgcatgtcagccccgaggagacc
cggctcaaggccaccatggaagagctcaagacctggctggccgagatgtacaacgacccc
tccaagttctctgagcccaagttccccacagagtgtttctttctgacactgcacacccac
cacctgtccatcctaccgggctgccgacgctacatccgcaggctgagagccatccgcgag
ctcaacaggaccgtggaggagctgaagaacagtgagagccagtggaaggactctccgctg
gccagccgacaccgagagatgctaaagagatgcaaaacccagctcaaaaaactggtgcgc
tccaaagcctgtgccgacgcagggcttctggatgagaaccttttacgcagatgtctgcag
ttctacagtatggtcattcagctcatcctacgcatggtggatcccgcctacccacacatg
agtctaccgctgaatccggaggttcccaaaagctttgctgctctgccggagttttacatt
gaagatgtggccgagttcctgcttttcgttgtgcagtattcccctcaggtcctgtatgag
ccctgcgtccaggacattgtcacttttctggtggtgttcatctgcagtcagaactacatc
cggaacccctacctgatcgccaagctggtggaagtgctttttgtcaccaacccggcggtg
cagctgcgcacccagcgcttttccgagatgatggagaaccaccccctgtccgtcaaacag
ttggtcccggccctcatgaagttctacacagatgtggagcacaccggtgccaccagcgag
ttctacgataagttcaccatccgctaccacatcagcaccatcttcaagagcctctggcag
aacatgggccaccacggcacattcctggaggagttcaactctggcaagcagtttgtgcgc
tacatcaacatgttgatcaacgacaccaccttcctgctggacgagagcctggagtcccta
aagcgcatccatgaggtccaggaggagatgaagaacaaggagcagtgggatcagcttccc
agggagcagcagcagagccgccagtcccagctgacccaggacgagcgggtgtcgcgctcc
tacctggcactggccacagagactgttgacatgttccatatccttaccaagcaggtccag
aagcccttcctccggcccgagctggggcctcgtctggcagccatgctgaactttaacctc
cagcagctttgcgggccgaagtgccgggacctgaaggtggaaaacccagagaagtatggt
tttgagcccaaaaagctcctggaccagcttactgacatttacttgcaacttgactgtgcc
cgctttgccaaggccatcgccgacgaccagcggtcgtacagtcaagaactctttgaggaa
gttatttccaagatgacgaaagccggcatcaagtctaccatcgccattgaaaaattcaag
ctactatcggagaaggtggaggagattgtcgcaaggaactctcagtccgaaatggactac
agtgacgcacctgacgagtttaaagatcctctgatggacaccctaatgacagaccctgtg
atattgccctctgggaacatcatggaccgagccatcatcctccgccaccttctcaactcc
cccactgaccccttcaacagacagccgctcaatgaaagcatgctggagtcactccctgaa
ctgaaggagaggatccaggcatggatgagagagaagcaaggccagggacgtttcctctaa
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